First Confirmed Report of Powdery Mildew Caused by Erysiphe aquilegiae on Casuarina cunninghamiana in Argentina

Casuarina cunninghamiana Miq. (Fam. Casuarinaceae) is native to Australia and was introduced to Argentina and used as a windbreak, shade tree and for ornamental purposes. In autumn 2009, the potted seedlings in the nursery of La Plata University were found to be infected with a powdery mildew. Symptoms first appeared as thin white colonies, which subsequently developed into an abundant growth on the leaves and young stems. The damage caused by the powdery mildew infection has been observed every year after this initial infection and was again confirmed in April, 2011. There have been a few reports on the presence of powdery mildew on Casuarina spp. (Mantz et al., 2008; Farr and Rossman, 2011). In all the reports, the pathogen was cited to be Oidium sp. Thus, the aim of this work was to identify the causal agent of the powdery mildew observed on casuarina in Argentina

Analysis of triterpenoids, carotenoids, and phenylpropanoids in the flowers, leaves, roots, and stems of white bitter melon (Cucurbitaceae, Momordica charantia)

Purpose: To evaluate the contents of carotenoids, triterpenoids, and phenylpropanoids in different parts of white bitter melon.Methods: We evaluated the accumulation of 2 triterpenoids, 10 carotenoids, and 11 phenylpropanoids in different parts of white bitter melon, including fruits at four different developmental stages using HPLC.Results: Charantin, lutein, and rutin were the main triterpenoids, carotenoids, and phenylpropanoids, respectively. The accumulation of triterpenoids (momordicine and charantin), carotenoids (antheraxanthin, lutein, violaxanthin, α-carotene, and β-carotene), and phenylpropanoids (caffeic acid, chlorogenic acid, epicatechin, gallic acid, p-coumaric acid, rutin, and trans-cinnamic acid) was high inthe leaves and/or flowers, which are exposed to direct sunlight, but low in the roots.Conclusion: Most of the analyzed components were accumulated at high levels in the leaves and/or flowers. These results will help exploit the compounds in various parts of white bitter melon that are beneficial for human health. Keywords: Momordica charantia, Bitter melon, Triterpenoid, Carotenoid, Phenylpropanoi

Blind Biological Sequence Denoising with Self-Supervised Set Learning

Biological sequence analysis relies on the ability to denoise the imprecise output of sequencing platforms. We consider a common setting where a short sequence is read out repeatedly using a high-throughput long-read platform to generate multiple subreads, or noisy observations of the same sequence. Denoising these subreads with alignment-based approaches often fails when too few subreads are available or error rates are too high. In this paper, we propose a novel method for blindly denoising sets of sequences without directly observing clean source sequence labels. Our method, Self-Supervised Set Learning (SSSL), gathers subreads together in an embedding space and estimates a single set embedding as the midpoint of the subreads in both the latent and sequence spaces. This set embedding represents the "average" of the subreads and can be decoded into a prediction of the clean sequence. In experiments on simulated long-read DNA data, SSSL methods denoise small reads of $\leq 6$ subreads with 17% fewer errors and large reads of $>6$ subreads with 8% fewer errors compared to the best baseline. On a real dataset of antibody sequences, SSSL improves over baselines on two self-supervised metrics, with a significant improvement on difficult small reads that comprise over 60% of the test set. By accurately denoising these reads, SSSL promises to better realize the potential of high-throughput DNA sequencing data for downstream scientific applications

Comparison of Laparoendoscopic Single-Site Radical Nephrectomy with Conventional Laparoscopic Radical Nephrectomy for Localized Renal-Cell Carcinoma

Purpose: To compare the results of laparoendoscopic single-site (LESS) radical nephrectomy with conventional laparoscopic radical nephrectomy for localized renal-cell carcinoma (RCC). Patients and Methods: This study was designed as a matched case-controlled study from our institute`s RCC database. Nineteen consecutive patients who were undergoing LESS radical nephrectomy were compared with 38 patients who were undergoing conventional laparoscopic radical nephrectomy. The matching process accounted for sex, age, operative side, and tumor size. Results: No significant differences were observed in mean operative time (190.8 vs 172.4 min, P - 0.249), estimated blood loss (143.2 vs 199.5 mL, P - 0.235), and complication rate (15.8% vs 21.1 %, P - 0.635) between the LESS and conventional laparoscopy groups. Postoperative hospital stay after LESS radical nephrectomy was 2.7 (2-4) days, compared with 3.9 (3-7) days in the conventional laparoscopy group (P < 0.001). Postoperative pain, as measured by visual analog scale at postoperative day 1 (4.7 vs 5.8 points, P - 0.001), 2 (3.4 vs 4.6 points, P < 0.001), and 3 (2.7 vs 4.0 points, P = 0.008) was significantly lower in the LESS group. Conclusion: LESS radical nephrectomy is a feasible and safe surgical option for localized RCC that demonstrates improved cosmetic outcomes and the additional benefits of decreased postoperative pain and decreased hospital stay.Desai MM, 2009, UROLOGY, V74, P805, DOI 10.1016/j.urology.2009.02.083Stolzenburg JU, 2009, EUR UROL, V56, P644, DOI 10.1016/j.eururo.2009.06.022Stolzenburg JU, 2009, J ENDOUROL, V23, P1287, DOI 10.1089/end.2009.0120Raman JD, 2009, EUR UROL, V55, P1198, DOI 10.1016/j.eururo.2008.08.019Park YH, 2009, J ENDOUROL, V23, P833, DOI 10.1089/end.2009.0025Kommu SS, 2009, BJU INT, V103, P1034, DOI 10.1111/j.1464-410X.2008.08282.xRAYBOURN JH, 2009, UROLOGY 0721Canes D, 2008, EUR UROL, V54, P1020, DOI 10.1016/j.eururo.2008.07.009Bandi G, 2008, BJU INT, V101, P459, DOI 10.1111/j.1464-410X.2007.07235.xDELGADO S, 2008, GASTROENTEROL HEPATO, V31, P515Raman JD, 2007, UROLOGY, V70, P1039, DOI 10.1016/j.urology.2007.10.001Colombo JR, 2007, CLINICS, V62, P251Hemal AK, 2007, J UROLOGY, V177, P862, DOI 10.1016/j.juro.2006.10.053Kawauchi A, 2007, UROLOGY, V69, P53, DOI 10.1016/j.urology.2006.09.009KAVOUSSI LR, 1993, UROLOGY, V42, P603CLAYMAN RV, 1991, J UROLOGY, V146, P2781

First report of Septoria centellae associated with leaf spot of Centella asiatica in Korea

Septoria centellae associated with leaf spot of Centella asiatica is reported for the first time in Korea. The fungus is described and illustrated in detail. It is also compared with related species of Septoria present on Centella and Hydrocotyle spp. with taxonomic comments. Two monoconidial isolates from Jeju and Wando were successfully cultured and have been deposited in the Korean Agricultural Culture Collection.Facultad de Ciencias Agrarias y Forestale

Influence of pectin on phenylpropanoid accumulation in buckwheat (Fagopyrum esculentum) sprout

Buckwheat (Fagopyrum esculentum Monech) contains several secondary metabolites like phenolic chemicals. Pectin has been demonstrated to be an efficient elicitor from the biotic group for triggering the defensive response, which enhances the production of secondary metabolites. In this study, the effect of pectin on the growth of buckwheat sprouts and the production of phenylpropanoid compounds in common buckwheat sprouts was investigated by using high-performance liquid chromatography (HPLC). Pectin treatments of 0, 2, 4, 6, and 8 mg/L were administered on buckwheat sprouts for ten days to assess the growth characteristics and optimum concentrations. In comparison to the control treatment, 2 mg/L pectin enhances the shoot length by 24%. But when pectin concentration continued to rise, a tendency toward shorter shoots was seen. Pectin treatment decreased the fresh weight of the sprout as compared to the control treatment. The phenylpropanoid accumulation in buckwheat sprouts varied depending on the amount of pectin utilized. Pectin treatment at 6 mg/L resulted in a 15.10% increase in total phenylpropanoid accumulation. The findings of this study indicate that pectin is a possible elicitor, however, more research on how pectin affects the buildup of phenylpropanoids in buckwheat sprouts would be more intriguing to examine the implications of this work

SupSiam: Non-contrastive Auxiliary Loss for Learning from Molecular Conformers

We investigate Siamese networks for learning related embeddings for augmented samples of molecular conformers. We find that a non-contrastive (positive-pair only) auxiliary task aids in supervised training of Euclidean neural networks (E3NNs) and increases manifold smoothness (MS) around point-cloud geometries. We demonstrate this property for multiple drug-activity prediction tasks while maintaining relevant performance metrics, and propose an extension of MS to probabilistic and regression settings. We provide an analysis of representation collapse, finding substantial effects of task-weighting, latent dimension, and regularization. We expect the presented protocol to aid in the development of reliable E3NNs from molecular conformers, even for small-data drug discovery programs.Comment: Submitted to the MLDD workshop, ICLR 202