The crystal structure of the three-iron ferredoxin II from Desulfovibrio gigas

AbstractThe crystal structure of oxidized ferredoxin II from the sulfate-reducing bacterium Desulfovibrio gigas has been determined and refined at 1.7 Å resolution. The folding of the polypeptide chain is similar to that of the 2[4Fe-4S] ferredoxin in Peptococcus aerogenes, except for an extended helical segment near the C-terminus. The single [3Fe-4S] cluster in D. gigas is similar to a [4Fe-4S] cluster, but lacks one Fe atom and is coordinated to Cys-8, -14 and -50. The side chain of Cys-11 is not bound to the cluster, but is rotated toward the solvent and modified by some, as yet undetermined, chemical group. Cys-18 and Cys-42 form a disulfide bridge. A previously undetected extra amino acid is found after residue 55

Efekti delimičnog sušenja korenova i deficita navodnjavanja na fiziologiju i rastenje paradajza

The effects of partial rootzone drying (PRD), deficit irrigation (DI), and full irrigation (FI) on tomato physiology were investigated. In PRD and DI plants, leaf water potential values and stomatal conductance were significantly lower, while xylem ABA concentration was greater compared to FI plants. Photosynthesis was similar for all treatments. Water use efficiency was improved by PRD and DI, which reduced fruit dry weight, but had no effect on dry weight of leaves and stems.U radu su istraživani efekti delimičnog sušenja korenova (PRD), deficita navodnjavanja (DI) i punog navodnjavanja (FI) na fiziologiju paradajza. Kod PRD i DI biljaka vodni potencijal listova i provodljivost stoma su bili značajno niži, dok je koncentracija ABA u ksilemu bila veća u poređenju sa FI biljkama. Fotosinteza je bila slična kod svih tretmana. PRD i DI tretmani su značajno povećali efikasnost korišćenja vode, redukovali su suvu masu plodova, ali nisu imali uticaja na suvu masu listova i stabla

Relaxation kinetics in two-dimensional structures

We have studied the approach to equilibrium of islands and pores in two dimensions. The two-regime scenario observed when islands evolve according to a set of particular rules, namely relaxation by steps at low temperature and smooth at high temperature, is generalized to a wide class of kinetic models and the two kinds of structures. Scaling laws for equilibration times are analytically derived and confirmed by kinetic Monte Carlo simulations.Comment: 6 pages, 7 figures, 1 tabl

Implementation of an Optimal First-Order Method for Strongly Convex Total Variation Regularization

We present a practical implementation of an optimal first-order method, due to Nesterov, for large-scale total variation regularization in tomographic reconstruction, image deblurring, etc. The algorithm applies to $\mu$-strongly convex objective functions with $L$-Lipschitz continuous gradient. In the framework of Nesterov both $\mu$ and $L$ are assumed known -- an assumption that is seldom satisfied in practice. We propose to incorporate mechanisms to estimate locally sufficient $\mu$ and $L$ during the iterations. The mechanisms also allow for the application to non-strongly convex functions. We discuss the iteration complexity of several first-order methods, including the proposed algorithm, and we use a 3D tomography problem to compare the performance of these methods. The results show that for ill-conditioned problems solved to high accuracy, the proposed method significantly outperforms state-of-the-art first-order methods, as also suggested by theoretical results.Comment: 23 pages, 4 figure

Chiral three-nucleon forces and bound excited states in neutron-rich oxygen isotopes

We study the spectra of neutron-rich oxygen isotopes based on chiral two- and three-nucleon interactions. First, we benchmark our many-body approach by comparing ground-state energies to coupled-cluster results for the same two-nucleon interaction, with overall good agreement. We then calculate bound excited states in 21,22,23O, focusing on the role of three-nucleon forces, in the standard sd shell and an extended sdf7/2p3/2 valence space. Chiral three-nucleon forces provide important one- and two-body contributions between valence neutrons. We find that both these contributions and an extended valence space are necessary to reproduce key signatures of novel shell evolution, such as the N = 14 magic number and the low-lying states in 21O and 23O, which are too compressed with two-nucleon interactions only. For the extended space calculations, this presents first work based on nuclear forces without adjustments. Future work is needed and open questions are discussed.Comment: 6 pages, 4 figures, published versio

Convergence of the critical attractor of dissipative maps: Log-periodic oscillations, fractality and nonextensivity

For a family of logistic-like maps, we investigate the rate of convergence to the critical attractor when an ensemble of initial conditions is uniformly spread over the entire phase space. We found that the phase space volume occupied by the ensemble W(t) depicts a power-law decay with log-periodic oscillations reflecting the multifractal character of the critical attractor. We explore the parametric dependence of the power-law exponent and the amplitude of the log-periodic oscillations with the attractor's fractal dimension governed by the inflexion of the map near its extremal point. Further, we investigate the temporal evolution of W(t) for the circle map whose critical attractor is dense. In this case, we found W(t) to exhibit a rich pattern with a slow logarithmic decay of the lower bounds. These results are discussed in the context of nonextensive Tsallis entropies.Comment: 8 pages and 8 fig

Sustainability-focused international PBL project:Rethinking digital education for individuals of low socioeconomic status

Providing access to education for individuals of lower socio-economic status is a significant way to reduce poverty, as it empowers them to grow as professionals and as individuals. Although there is an increasing sense of urgency to promote these changes, notably motivated by the Sustainable Development Goals (SDGs) set by the UN 2030 Agenda, there are still few successful ways to solve this problem on a large-scale. As digital technology develops and affordability increases, new ways to share quality educational content are created. In an exploratory case study, with a qualitative approach, this paper presents the development of a digital application focused on providing quality educational content directed to vulnerable groups that lack access to formal learning experiences, specifically focused on waste pickers in Brasilia, Brazil. The main data collection methods used to make the decisions through the development process were observation, surveys, and interviews. Within the framework of Problem Based Learning (PBL) an international cross-disciplinary collaboration among different universities, the project, denominated “Mobile Education”, involved: (i) the design and implementation of a system consisting of both a web and mobile application; (ii) the research of a viable business model to provide long-term sustainability for the project; (iii) and the creation of a pilot course of financial education for the preliminary target group, i.e., waste pickers from Brasilia, Brazil. Conclusively, the project aims to positively impact social transformation for individuals who work at the Waste Sorting facilities and lack financial knowledge. The Mobile Education project resulted in a functional version of the app (Web and Mobile) as well as the delimitation of a viable business model to keep it providing digital equality in Brazilian education

Water relations and yield of lysimeter-grown strawberries under limited irrigation

The effects of partial root-zone drying (PRD), as compared to deficit irrigation (DI) and full irrigation (FI), on strawberry (cv. Honeoye) berry yield, yield components and irrigation water use efficiency (WUEI) were investigated in a field lysimeter under an automatic rain-out shelter. The irrigation treatments were imposed from the beginning of flowering to the end of fruit maturity. In FI the whole root zone was irrigated every second day to field capacity viz. volumetric soil water content (u) of 20%; while in DI and PRD 60% water of FI was irrigated to either the whole or one half of the root system, respectively, at each irrigation event. In PRD, irrigation was shifted from one side to the other side of the plants when u of the drying side had decreased to 8–11%. Compared to FI plants, leaf water potential was significantly lower in DI and PRD plants in 3 out of 10 measurement occasions, while stomatal conductance was similar among the three treatments. Leaf area, fresh berry yield (FY), individual berry fresh weight, berry water content, and berry dry weight (DW) were significantly lower in DI and PRD plants than those of FI plants; whereas the total number of berry per plant was similar among treatments. Compared with FI, the DI and PRD treatments saved 40% of irrigation water, and this led to a 28 and 50% increase of WUEI based on berry FY and DW, respectively, for both DI and PRD. Conclusively, under the conditions of this study PRD had no advantage compared to DI in terms of berry yield and WUEI. DI and PRD similarly decreased berry yield and yield components and thus cannot be recommended under similar conditions.This is the peer-reviewed version of Liu, F., Savić, S., Jensen, C.R., Shahnazari, A., Jacobsen, S.E., Stikić, R.,& Andersen, M.N. (2007). Water relations and yield of lysimeter-grown strawberries under limited irrigation. in Scientia Horticulturae, Elsevier., 111, 128-132. [https://doi.org/10.1016/j.scienta.2006.10.006

Large-space shell-model calculations for light nuclei

An effective two-body interaction is constructed from a new Reid-like $NN$ potential for a large no-core space consisting of six major shells and is used to generate the shell-model properties for light nuclei from $A$=2 to 6. (For practical reasons, the model space is partially truncated for $A$=6.) Binding energies and other physical observables are calculated and compare favorably with experiment.Comment: prepared using LaTex, 21 manuscript pages, no figure

Low-Energy Universality in Atomic and Nuclear Physics

An effective field theory developed for systems interacting through short-range interactions can be applied to systems of cold atoms with a large scattering length and to nucleons at low energies. It is therefore the ideal tool to analyze the universal properties associated with the Efimov effect in three- and four-body systems. In this "progress report", we will discuss recent results obtained within this framework and report on progress regarding the inclusion of higher order corrections associated with the finite range of the underlying interaction.Comment: Commissioned article for Few-Body Systems, 47 pp, 16 fig