Can climate models capture the structure of extratropical cyclones?

Composites of wind speeds, equivalent potential temperature, mean sea level pressure, vertical velocity, and relative humidity have been produced for the 100 most intense extratropical cyclones in the Northern Hemisphere winter for the 40-yr ECMWF Re-Analysis (ERA-40) and the high resolution global environment model (HiGEM). Features of conceptual models of cyclone structure—the warm conveyor belt, cold conveyor belt, and dry intrusion—have been identified in the composites from ERA-40 and compared to HiGEM. Such features can be identified in the composite fields despite the smoothing that occurs in the compositing process. The surface features and the three-dimensional structure of the cyclones in HiGEM compare very well with those from ERA-40. The warm conveyor belt is identified in the temperature and wind fields as a mass of warm air undergoing moist isentropic uplift and is very similar in ERA-40 and HiGEM. The rate of ascent is lower in HiGEM, associated with a shallower slope of the moist isentropes in the warm sector. There are also differences in the relative humidity fields in the warm conveyor belt. In ERA-40, the high values of relative humidity are strongly associated with the moist isentropic uplift, whereas in HiGEM these are not so strongly associated. The cold conveyor belt is identified as rearward flowing air that undercuts the warm conveyor belt and produces a low-level jet, and is very similar in HiGEM and ERA-40. The dry intrusion is identified in the 500-hPa vertical velocity and relative humidity. The structure of the dry intrusion compares well between HiGEM and ERA-40 but the descent is weaker in HiGEM because of weaker along-isentrope flow behind the composite cyclone. HiGEM’s ability to represent the key features of extratropical cyclone structure can give confidence in future predictions from this model

An overview of the extratropical storm tracks in CMIP6 historical simulations

The representation of the winter and summer extratropical storm tracks in both hemispheres is evaluated in detail for the available models in the 6th phase of the Coupled Model Intercomparison Project (CMIP6). The state of the storm tracks from 1979-2014 is compared to that in ERA5 using a Lagrangian objective cyclone tracking algorithm. It is found that the main biases present in the previous generation of models (CMIP5) still persist, albeit to a lesser extent. The equatorward bias around the SH is much reduced and there appears to be some improvement in mean biases with the higher resolution models, such as the zonal tilt of the North Atlantic storm track. Low resolution models have a tendency to under-estimate the frequency of high intensity cyclones with all models simulating a peak intensity that is too low for cyclones in the SH. Explosively developing cyclones are under-estimated across all ocean basins and in both hemispheres. In particular the models struggle to capture the rapid deepening required for these cyclones. For all measures, the CMIP6 models exhibit an overall improvement compared to the previous generation of CMIP5 models. In the NH most improvements can be attributed to increased horizontal resolution, whereas in the SH the impact of resolution is less apparent and any improvements are likely a result of improved model physics

Compounding heatwave-extreme rainfall events driven by fronts, high moisture, and atmospheric instability

Heatwaves have been shown to increase the likelihood and intensity of extreme rainfall occurring immediately afterward, potentially leading to increased flood risk. However, the exact mechanisms connecting heatwaves to extreme rainfall remain poorly understood. In this study, we use weather type data sets for Australia and Europe to identify weather patterns, including fronts, cyclones, and thunderstorm conditions, associated with heatwave terminations and following extreme rainfall events. We further analyze, using reanalysis data, how atmospheric instability and moisture availability change before and after the heatwave termination depending on whether the heatwave is followed by extreme rainfall, as well as the location of the heatwave. We find that most heatwaves terminate during thunderstorm and/or frontal conditions. Additionally, atmospheric instability and moisture availability increase several days before the heatwave termination; but only if heatwaves are followed by extreme rainfall. We also find that atmospheric instability and moisture after a heatwave are significantly higher than expected from climatology for the same time of the year, and that highest values of instability and moisture are associated with highest post-heatwave rainfall intensities. We conclude that the joint presence of high atmospheric instability, moisture, as well as frontal systems are likely to explain why rainfall is generally more extreme and likely after heatwaves, as well as why this compound hazard is mainly found in the non-arid mid and high latitudes. An improved understanding of the drivers of these compound events will help assess potential changing impacts in the future

Quantifying causal teleconnections to drought and fire risks in Indonesian Borneo

Fires occurring over the peatlands in Indonesian Borneo accompanied by droughts have posed devastating impacts on human health, livelihoods, economy and the natural environment, and their prevention requires comprehensive understanding of climate-associated risk. Although it is widely known that the droughts are associated with El Niño events, the onset process of El Niño and thus the drought precursors and their possible changes under the future climate are not clearly understood. Here, we use a causal network approach to quantify the strength of teleconnections to droughts at a seasonal timescale shown in observations and climate models. We portray two drivers of June-July-August (JJA) droughts identified through literature review and causal analysis, namely Niño 3.4 sea surface temperature (SST) in JJA (El Niño Southern Oscillation [abbreviated as ENSO]) and SST anomaly over the eastern North Pacific to the east of the Hawaiian Islands (abbreviated as Pacific SST) in March-April-May (MAM) period. We argue that the droughts are strongly linked to ENSO variability, with drier years corresponding to El Niño conditions. The droughts can be predicted with a lead time of 3 months based on their associations with Pacific SST, with higher SST preceding drier conditions. We find that under the SSP585 scenario, the Coupled Model Intercomparison Phase 6 (CMIP6) multi-model ensembles show significant increase in both the maximum number of consecutive dry days in the Indonesian Borneo region in JJA (p = 0.006) and its linear association with Pacific SST in MAM (p = 0.001) from year 2061 to 2100 compared with the historical baseline. Some models are showing unrealistic amounts of JJA rainfall and underestimate drought risks in Indonesian Borneo and their teleconnections, owing to the underestimation of ENSO amplitude and overestimation of local convections. Our study strengthens the possibility of early warning triggers of fires and stresses the need for taking enhanced climate risk into consideration when formulating long-term policies to eliminate fires

Can climate models capture the structure of extratropical cyclones?

Composites of wind speeds, equivalent potential temperature, mean sea level pressure, vertical velocity, and relative humidity have been produced for the 100 most intense extratropical cyclones in the Northern Hemisphere winter for the 40-yr ECMWF Re-Analysis (ERA-40) and the high resolution global environment model (HiGEM). Features of conceptual models of cyclone structure—the warm conveyor belt, cold conveyor belt, and dry intrusion—have been identified in the composites from ERA-40 and compared to HiGEM. Such features can be identified in the composite fields despite the smoothing that occurs in the compositing process. The surface features and the three-dimensional structure of the cyclones in HiGEM compare very well with those from ERA-40. The warm conveyor belt is identified in the temperature and wind fields as a mass of warm air undergoing moist isentropic uplift and is very similar in ERA-40 and HiGEM. The rate of ascent is lower in HiGEM, associated with a shallower slope of the moist isentropes in the warm sector. There are also differences in the relative humidity fields in the warm conveyor belt. In ERA-40, the high values of relative humidity are strongly associated with the moist isentropic uplift, whereas in HiGEM these are not so strongly associated. The cold conveyor belt is identified as rearward flowing air that undercuts the warm conveyor belt and produces a low-level jet, and is very similar in HiGEM and ERA-40. The dry intrusion is identified in the 500-hPa vertical velocity and relative humidity. The structure of the dry intrusion compares well between HiGEM and ERA-40 but the descent is weaker in HiGEM because of weaker along-isentrope flow behind the composite cyclone. HiGEM’s ability to represent the key features of extratropical cyclone structure can give confidence in future predictions from this model

Sting jets in intense winter North-Atlantic windstorms

Extratropical cyclones dominate autumn and winter weather over western Europe. The strongest cyclones, often termed windstorms, have a large socio-economic impact due to the strong surface winds and associated storm surges in coastal areas. Here we show that sting jets are a common feature of windstorms; up to a third of the 100 most intense North Atlantic winter windstorms over the last two decades satisfy conditions for sting jets. The sting jet is a mesoscale descending airstream that can cause strong near-surface winds in the dry slot of the cyclone, a region not usually associated with strong winds. Despite their localized transient nature these sting jets can cause significant damage, a prominent example being the storm that devastated southeast England on 16 October 1987. We present the first regional climatology of windstorms with sting jets. Previously analysed sting jet cases appear to have been exceptional in their track over northwest Europe rather than in their strength

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumorinfiltrating lymphocytes (TILs) based on H&E images from 13 TCGA tumor types. These TIL maps are derived through computational staining using a convolutional neural network trained to classify patches of images. Affinity propagation revealed local spatial structure in TIL patterns and correlation with overall survival. TIL map structural patterns were grouped using standard histopathological parameters. These patterns are enriched in particular T cell subpopulations derived from molecular measures. TIL densities and spatial structure were differentially enriched among tumor types, immune subtypes, and tumor molecular subtypes, implying that spatial infiltrate state could reflect particular tumor cell aberration states. Obtaining spatial lymphocytic patterns linked to the rich genomic characterization of TCGA samples demonstrates one use for the TCGA image archives with insights into the tumor-immune microenvironment