Effects of Soldier-Derived Terpenes on Soldier Caste Differentiation in the Termite (Reticulitermes flavipes)

Primer pheromones play key roles in regulating division of labor, which is one of the most fundamental and defining aspects of insect sociality. Primer pheromones are chemical messengers that transmit hormone-like messages among colony members; in recipients these messages can either induce or suppress phenotypic caste differentiation. Here, we investigated soldier-caste-derived chemicals as possible primer pheromones in the lower termite Reticulitermes flavipes, a species for which no primer pheromones have yet been identified. We determined that soldier head extracts (SHE), when provided to totipotent workers along with the insect morphogenetic juvenile hormone (JH), significantly enhanced soldier caste differentiation. When applied alone, however, SHE had no impacts on caste differentiation, survivorship, or any other aspect of worker biology. These findings support that soldier-derived chemicals serve as primer pheromones which enhance the action of the endogenous morphogenetic hormone JH. Thus, SHE chemicals apparently have no effect when received under natural conditions by non-receptive individuals with presumably low JH titers. Gas chromatography-mass spectrometry analysis identified two terpenes as the most plentiful components of R. flavipes SHE. Through GC-MS and NMR analyses, these terpenes were identified as γ-cadinene and its corresponding aldehyde, g-cadinenal. Validative bioassays with commercially available cadinene confirmed its activity. However, several other previously identified terpenes were also significantly active. These findings reveal a novel primer pheromone-like function for soldier-derived terpenes in termites, and further suggest convergent evolution of terpene functions in enhancing JH-dependent soldier caste differentiation

Prediction and observation of tin and silver plasmas with index of refraction greater than one in the soft x-ray range

Includes bibliographical references (pages 016404-6-016404-7).We present the calculated prediction and the experimental confirmation that doubly ionized Ag and Sn plasmas can have an index of refraction greater than one for soft x-ray wavelengths. Interferometry experiments conducted using a capillary discharge soft x-ray laser operating at a wavelength of 46.9 nm (26.44 eV) confirm that in few times ionized laser-created plasmas of these elements the anomalous dispersion from bound electrons can dominate the free electron contribution, making the index of refraction greater than one. The results confirm that bound electrons can strongly influence the index of refraction of numerous plasmas over abroad range of soft x-ray wavelengths confirming recent observations. The understanding of index of refraction at short wavelengths will become even more essential during the next decade as x-ray free electron lasers will become available to probe a wider variety of plasmas at higher densities and shorter wavelengths

Prediction and observation of tin and silver plasmas with index of refraction greater than one in the soft x-ray range

Includes bibliographical references (pages 016404-6-016404-7).We present the calculated prediction and the experimental confirmation that doubly ionized Ag and Sn plasmas can have an index of refraction greater than one for soft x-ray wavelengths. Interferometry experiments conducted using a capillary discharge soft x-ray laser operating at a wavelength of 46.9 nm (26.44 eV) confirm that in few times ionized laser-created plasmas of these elements the anomalous dispersion from bound electrons can dominate the free electron contribution, making the index of refraction greater than one. The results confirm that bound electrons can strongly influence the index of refraction of numerous plasmas over abroad range of soft x-ray wavelengths confirming recent observations. The understanding of index of refraction at short wavelengths will become even more essential during the next decade as x-ray free electron lasers will become available to probe a wider variety of plasmas at higher densities and shorter wavelengths

Observation of multiply ionized plasmas with dominant bound electron contribution to the index of refraction

Includes bibliographical references.We report anomalous fringe shifts observed in soft X-ray laser interferograms of laser-created Al plasmas. This clear experimental evidence shows that the contribution of bound electrons can dominate the index of refraction of laser-created plasmas at soft X-ray wavelengths, resulting in values greater than 1. The comparison of measured and simulated interferograms shows that this results from the dominant contribution of low-charge ions to the index of refraction. This usually neglected bound electron contribution can affect the propagation of soft X-ray radiation in plasmas and the interferometric diagnostics of plasmas for many elements.This work was sponsored by the National Nuclear Security Administration under the Stewardship Science Academic Alliances program through DOE Research Grant # DE-FG03-02NA00062. Part of this work was performed under the auspices of the US Department of Energy by the University of California, Lawrence Livermore National Laboratory through the Institute of Laser Science and Application, under Contract No. W-7405-Eng-48. The CSU researchers also gratefully acknowledge the partial support of the NSF ERC Center for Extreme Ultraviolet Science and Technology, award EEC-0310717

Observation of multiply ionized plasmas with dominant bound electron contribution to the index of refraction

Includes bibliographical references.We report anomalous fringe shifts observed in soft X-ray laser interferograms of laser-created Al plasmas. This clear experimental evidence shows that the contribution of bound electrons can dominate the index of refraction of laser-created plasmas at soft X-ray wavelengths, resulting in values greater than 1. The comparison of measured and simulated interferograms shows that this results from the dominant contribution of low-charge ions to the index of refraction. This usually neglected bound electron contribution can affect the propagation of soft X-ray radiation in plasmas and the interferometric diagnostics of plasmas for many elements.This work was sponsored by the National Nuclear Security Administration under the Stewardship Science Academic Alliances program through DOE Research Grant # DE-FG03-02NA00062. Part of this work was performed under the auspices of the US Department of Energy by the University of California, Lawrence Livermore National Laboratory through the Institute of Laser Science and Application, under Contract No. W-7405-Eng-48. The CSU researchers also gratefully acknowledge the partial support of the NSF ERC Center for Extreme Ultraviolet Science and Technology, award EEC-0310717

Leveraging electronic health records for clinical research

Electronic health records (EHRs) can be a major tool in the quest to decrease costs and timelines of clinical trial research, generate better evidence for clinical decision making, and advance health care. Over the past decade, EHRs have increasingly offered opportunities to speed up, streamline, and enhance clinical research. EHRs offer a wide range of possible uses in clinical trials, including assisting with prestudy feasibility assessment, patient recruitment, and data capture in care delivery. To fully appreciate these opportunities, health care stakeholders must come together to face critical challenges in leveraging EHR data, including data quality/completeness, information security, stakeholder engagement, and increasing the scale of research infrastructure and related governance. Leaders from academia, government, industry, and professional societies representing patient, provider, researcher, industry, and regulator perspectives convened the Leveraging EHR for Clinical Research Now! Think Tank in Washington, DC (February 18-19, 2016), to identify barriers to using EHRs in clinical research and to generate potential solutions. Think tank members identified a broad range of issues surrounding the use of EHRs in research and proposed a variety of solutions. Recognizing the challenges, the participants identified the urgent need to look more deeply at previous efforts to use these data, share lessons learned, and develop a multidisciplinary agenda for best practices for using EHRs in clinical research. We report the proceedings from this think tank meeting in the following paper

Modeling biomedical experimental processes with OBI

BACKGROUND: Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data exchange and information retrieval. RESULTS: The Ontology for Biomedical Investigations (OBI), developed as a global, cross-community effort, provides a resource that represents biomedical investigations in an explicit and integrative framework. Here we detail three real-world applications of OBI, provide detailed modeling information and explain how to use OBI. CONCLUSION: We demonstrate how OBI can be applied to different biomedical investigations to both facilitate interpretation of the experimental process and increase the computational processing and integration within the Semantic Web. The logical definitions of the entities involved allow computers to unambiguously understand and integrate different biological experimental processes and their relevant components. AVAILABILITY: OBI is available at http://purl.obolibrary.org/obo/obi/2009-11-02/obi.ow

Data standards can boost metabolomics research, and if there is a will, there is a way.

Thousands of articles using metabolomics approaches are published every year. With the increasing amounts of data being produced, mere description of investigations as text in manuscripts is not sufficient to enable re-use anymore: the underlying data needs to be published together with the findings in the literature to maximise the benefit from public and private expenditure and to take advantage of an enormous opportunity to improve scientific reproducibility in metabolomics and cognate disciplines. Reporting recommendations in metabolomics started to emerge about a decade ago and were mostly concerned with inventories of the information that had to be reported in the literature for consistency. In recent years, metabolomics data standards have developed extensively, to include the primary research data, derived results and the experimental description and importantly the metadata in a machine-readable way. This includes vendor independent data standards such as mzML for mass spectrometry and nmrML for NMR raw data that have both enabled the development of advanced data processing algorithms by the scientific community. Standards such as ISA-Tab cover essential metadata, including the experimental design, the applied protocols, association between samples, data files and the experimental factors for further statistical analysis. Altogether, they pave the way for both reproducible research and data reuse, including meta-analyses. Further incentives to prepare standards compliant data sets include new opportunities to publish data sets, but also require a little "arm twisting" in the author guidelines of scientific journals to submit the data sets to public repositories such as the NIH Metabolomics Workbench or MetaboLights at EMBL-EBI. In the present article, we look at standards for data sharing, investigate their impact in metabolomics and give suggestions to improve their adoption

Bad faith in All’s Well That Ends Well

All’s Well That Ends Well is a complicated and disturbing play that has a comic ending, but which seems anything but a comedy with a forced marriage based on bed-trickery between the reluctant Bertram and the feisty and witty Helena. Unsurprisingly, audiences have tended to side with Helena and the play has been classified as a “problem comedy” ever since William Lawrence identified this particular group of Shakespeare plays nearly a century ago. I want to argue in this essay that the play might better be classified as an “equivocation” play alongside Macbeth, Othello, and Troilus and Cressida and that the anxieties about fidelity, honesty and truthfulness in marriage need to be read in terms of the fear of religious tolerance/intolerance which dominated religious politics in the early years of James’s reign before the passing of the Oath of Allegiance (1606). The play is notable for its interest in chop logic, which the clown in particular displays throughout the play, a counterpoint to the arguments of Bertram and Helena who want very different things, but who are bound together as future husband and wife. Although the language of treason and treachery is used throughout, the play is less interested in answering the question of how far one can trust a stranger within than the issue of how far one can accommodate the needs of others. This article is published as part of a collection to commemorate the 400th anniversary of William Shakespeare’s death