'Leaves and Eats Shoots': Direct Terrestrial Feeding Can Supplement Invasive Red Swamp Crayfish in Times of Need

PMCID: PMC3411828This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

Waves of Invaders: Interactions among Invasive Species and their Impacts on Ecosystem Structure and Functioning

PhDMany freshwater ecosystems sustain several invasive species. Here I examine multiple invasions in two highly invaded and well catalogued catchments; Lake Naivasha, Kenya and River Thames, England. New metrics, derived from stable isotope analysis, are used to provide measures of trophic diversity and to examine dietary interactions among species. I test the hypothesis that functionally similar sympatric species will occupy a smaller niche than their allopatric counterparts. Additionally, I quantify the impact of multiple invasive species on ecosystem structure and functioning in order to address the question; do interactions among species amplify or mitigate one another’s impact? In Lake Naivasha, the stable isotope metrics revealed serial replacement of invasive species due to dietary interactions. Invasive red swamp crayfish were eventually excluded from the lake due to niche restriction in the presence of a more recent invader, the common carp. Now, the crayfish have migrated into the catchment where they overlap with a species of native river crab. Here, I found a novel mechanism of invasion, whereby the crayfish restricted their niche at the invasion front in order to reduce competition with crabs. Crayfish also caused significant changes in invertebrate community structure and increased decomposition rates, which indirectly resulted in displacement of the crabs. In the Thames catchment, I catalogue the non-indigenous species and show how invasion rates have increased significantly since 1800 due to globalisation. Using the four species of invasive crayfish present (red swamp, signal, Turkish and virile), I demonstrate their extensive diet plasticity using novel measures of niche width and individual specialisation based on stable isotope data. Interactions among the crayfish were examined and this revealed that each species has varying and independent impacts on invertebrate community structure, algal standing stock and decomposition rates. Hence, interactions among invaders are not expected to amplify or mitigate one another’s impact and instead, the combined impact will be the sum of their allopatric impacts.School of Biological and Chemical Sciences at Queen Mary and the UK Environment Agenc

Basal rot of narcissus : understanding pathogenicity in fusarium oxysporum f. sp. narcissi

Fusarium oxysporum is a globally distributed soilborne fungal pathogen causing root rots, bulb rots, crown rots and vascular wilts on a range of horticultural plants. Pathogenic F. oxysporum isolates are highly host specific and are classified as formae speciales. Narcissus is an important ornamental crop and both the quality and yield of flowers and bulbs can be severely affected by a basal rot caused by F. oxysporum f. sp. narcissi (FON); 154 Fusarium isolates were obtained from different locations and Narcissus cultivars in the United Kingdom, representing a valuable resource. A subset of 30 F. oxysporum isolates were all found to be pathogenic and were therefore identified as FON. Molecular characterisation of isolates through sequencing of three housekeeping genes, suggested a monophyletic origin with little divergence. PCR detection of 14 Secreted in Xylem (SIX) genes, previously shown to be associated with pathogenicity in other F. oxysporum f. spp., revealed different complements of SIX7, SIX9, SIX10, SIX12 and SIX13 within FON isolates which may suggest a race structure. SIX gene sequences were unique to FON and SIX10 was present in all isolates, allowing for molecular identification of FON for the first time. The genome of a highly pathogenic isolate was sequenced and lineage specific (LS) regions identified which harboured putative effectors including the SIX genes. Real-time RT-PCR, showed that SIX genes and selected putative effectors were expressed in planta with many significantly upregulated during infection. This is the first study to characterise molecular variation in FON and provide an analysis of the FON genome. Identification of expressed genes potentially associated with virulence provides the basis for future functional studies and new targets for molecular diagnostics

What does the future look like for kelp when facing multiple stressors?

As primary producers and ecosystem engineers, kelp (generally Order Laminariales) are ecologically important, and their decline could have far-reaching consequences. Kelp are valuable in forming habitats for fish and invertebrates and are crucial for adaptation to climate change by creating coastal defenses and in providing key functions, such as carbon sequestration and food provision. Kelp are threatened by multiple stressors, such as climate change, over-harvesting of predators, and pollution. In this opinion paper, we discuss how these stressors may interact to affect kelp, and how this varies under different contexts. We argue that more research that bridges kelp conservation and multiple stressor theory is needed and outline key questions that should be addressed as a priority. For instance, it is important to understand how previous exposure (either to earlier generations or life stages) determines responses to emerging stressors, and how responses in kelp scale up to alter food webs and ecosystem functioning. By increasing the temporal and biological complexity of kelp research in this way, we will improve our understanding allowing better predictions. This research is essential for the effective conservation and potential restoration of kelp in our rapidly changing world

The combined effects of treated sewage discharge and land use on rivers

Freshwater ecosystems are increasingly threatened by multiple anthropogenic stressors. Release of treated sewage effluent and pollution from agricultural or urban sources can independently reduce water quality with implications for ecological communities. However, our knowledge of the combined effects of these stressors is limited. We performed a field study to quantify the combined effect of treated sewage discharge and land use on nutrient concentrations, sewage fungus presence and communities of macroinvertebrates and benthic algae. Over three seasons in four rivers we found that a model which included an interaction between sewage pollution and time of the year (i.e. months) was the best predictor of nutrient concentrations and the abundance of algae and sewage fungus. Both macroinvertebrate and algae communities shifted downstream of sewage input. Specifically, more tolerant groups, such as cyanobacteria and oligochaetes, were more abundant. The EPT (Ephemeroptera, Plecoptera and Tricoptera) water quality score was best explained by an interaction between month and agriculture in the surrounding landscape. Overall, our results show that sewage discharge has a significant impact on water quality and benthic riverine communities, regardless of the surrounding land uses. Agricultural inputs, however, could be more important than treated sewage discharge in reducing the abundance of sensitive invertebrate taxa. We need both improvements to wastewater treatment processes and reductions in agricultural pollution to reduce threats to vulnerable freshwater communities

Early detection and environmental drivers of sewage fungus outbreaks in rivers

1. Sewage effluent is a major ongoing threat to water quality and biodiversity in freshwater environments. It can cause outbreaks of sewage fungus (fungus-like bacteria which form macroscopic masses) but, until now, these were only qualitatively recorded from visual inspection, ignoring microscopic forms. 2. Here, we used an innovative method that combines machine learning, microscopy and flow cytometry, to rapidly and efficiently quantify the presence and abundance of sewage fungus in rivers. Our study involved 11 rivers with (n = 6) and without (n = 5) sewage input in England over four sampling occasions. 3. We were able to detect and enumerate the filaments before masses became visible to the naked eye and, as expected, we found a higher number of filaments downstream of sites where treated sewage was offloaded into the river. Therefore, our detection method could be used as a ‘canary in the coal mine’ for future outbreaks allowing early intervention. 4. Combining our quantitative data on filaments with data on the physical and chemical parameters of the rivers, we found that high conductivity, sulphate, nitrates and TDS were associated with the presence and proliferation of sewage fungus. This information can be extremely useful for regulatory bodies and water companies to develop mitigating strategies and action to prevent future outbreaks

Vector competence of Aedes aegypti, Culex tarsalis, and Culex quinquefasciatus from California for Zika virus.

Zika virus (ZIKV) has emerged since 2013 as a significant global human health threat following outbreaks in the Pacific Islands and rapid spread throughout South and Central America. Severe congenital and neurological sequelae have been linked to ZIKV infections. Assessing the ability of common mosquito species to transmit ZIKV and characterizing variation in mosquito transmission of different ZIKV strains is important for estimating regional outbreak potential and for prioritizing local mosquito control strategies for Aedes and Culex species. In this study, we evaluated the laboratory vector competence of Aedes aegypti, Culex quinquefasciatus, and Culex tarsalis that originated in areas of California where ZIKV cases in travelers since 2015 were frequent. We compared infection, dissemination, and transmission rates by measuring ZIKV RNA levels in cohorts of mosquitoes that ingested blood meals from type I interferon-deficient mice infected with either a Puerto Rican ZIKV strain from 2015 (PR15), a Brazilian ZIKV strain from 2015 (BR15), or an ancestral Asian-lineage Malaysian ZIKV strain from 1966 (MA66). With PR15, Cx. quinquefasciatus was refractory to infection (0%, N = 42) and Cx. tarsalis was infected at 4% (N = 46). No ZIKV RNA was detected in saliva from either Culex species 14 or 21 days post feeding (dpf). In contrast, Ae. aegypti developed infection rates of 85% (PR15; N = 46), 90% (BR15; N = 20), and 81% (MA66; N = 85) 14 or 15 dpf. Although MA66-infected Ae. aegypti showed higher levels of ZIKV RNA in mosquito bodies and legs, transmission rates were not significantly different across virus strains (P = 0.13, Fisher's exact test). To confirm infectivity and measure the transmitted ZIKV dose, we enumerated infectious ZIKV in Ae. aegypti saliva using Vero cell plaque assays. The expectorated plaque forming units PFU varied by viral strain: MA66-infected expectorated 13±4 PFU (mean±SE, N = 13) compared to 29±6 PFU for PR15-infected (N = 13) and 35±8 PFU for BR15-infected (N = 6; ANOVA, df = 2, F = 3.8, P = 0.035). These laboratory vector competence results support an emerging consensus that Cx. tarsalis and Cx. quinquefasciatus are not vectors of ZIKV. These results also indicate that Ae. aegypti from California are efficient laboratory vectors of ancestral and contemporary Asian lineage ZIKV

Modelling the potential for local management practices to offset climate change impacts on freshwater macroinvertebrate communities

A robust understanding of the interactions between global and local anthropogenic stressors is crucial for ecosystem management in the Anthropocene. Manipulative experiments in the laboratory or in the field can be used to build knowledge about the physiological and ecological effects of stressors, but predicting the combined landscape-scale effects of global stressors such as climate change, and local stressors such as land-use change requires a different approach. Here we used water quality and hydrology process-based models of entire river catchments in combination with a large biomonitoring dataset to predict the responses of macroinvertebrate communities under different climate change and land-use change scenarios. Using the River Thames in the U.K. as a model system, we predicted changes in water quality (temperature, flow, phosphorus [P], nitrogen, dissolved oxygen [DO]) and subsequent changes in macroinvertebrate communities for two climate change scenarios, individually and in combination with intensified agriculture and reduced P pollution (representing improved wastewater treatment). Our models predicted that water-quality changes associated with climate change may not influence total species richness, but that community composition will shift towards more pollution-tolerant and common taxa based on responses of community indices and taxon-specific responses. We also found that the negative impacts of climate change on water quality (e.g., increased P concentration, decreased DO concentration) accumulate through the catchment, but that local land-use practices influencing P dynamics can modify this trend. Furthermore, although the intensified agriculture scenario was predicted to have minimal impacts on macroinvertebrate communities (a result potentially related to shifting baselines as the Thames is already heavily polluted), we found that reduced P pollution resulting from improved wastewater treatment was able to mostly offset the negative impacts of climate change on macroinvertebrate communities. Our results demonstrate that using process-based models to study networks of interacting stressors at a landscape scale can provide useful insights into the ecological impacts of anthropogenic global change, and adds support to the idea that management of local stressors has the potential to mitigate some of the impacts of climate change on ecosystems

Prevalence and Characterization of Avoidant Restrictive Food Intake Disorder in a Paediatric Population

Peer reviewedPublisher PD

Draft genome sequence of an onion basal rot isolate of Fusarium proliferatum

Fusarium proliferatum is a component of the onion basal rot disease complex. We present an annotated F. proliferatum draft genome sequence, totaling 45.8 Mb in size, assembled into 597 contigs, with a predicted 15,418 genes. The genome contains 58 secondary metabolite clusters and homologs of the Fusarium oxysporum effector SIX2