81 research outputs found

    Bacteriophage-encoded depolymerases: their diversity and biotechnological applications

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    Bacteriophages (phages), natural enemies of bacteria, can encode enzymes able to degrade polymeric substances. These substances can be found in the bacterial cell surface, such as polysaccharides, or are produced by bacteria when they are living in biofilm communities, the most common bacterial lifestyle. Consequently, phages with depolymerase activity have a facilitated access to the host receptors, by degrading the capsular polysaccharides, and are believed to have a better performance against bacterial biofilms, since the degradation of extracellular polymeric substances by depolymerases might facilitate the access of phages to the cells within different biofilm layers. Since the diversity of phage depolymerases is not yet fully explored, this is the first review gathering information about all the depolymerases encoded by fully sequenced phages. Overall, in this study, 160 putative depolymerases, including sialidases, levanases, xylosidases, dextranases, hyaluronidases, peptidases as well as pectate/pectin lyases, were found in 143 phages (43 Myoviridae, 47 Siphoviridae, 37 Podoviridae, and 16 unclassified) infecting 24 genera of bacteria. We further provide information about the main applications of phage depolymerases, which can comprise areas as diverse as medical, chemical, or food-processing industry.DPP acknowledges the financial support from the Portuguese Foundation for Science and Technology (FCT) through the grant SFRH/BD/76440/2011. SS is an FCT investigator (IF/01413/2013). The authors also thank FCT for the Strategic Project of the UID/BIO/04469/2013 unit, FCT and European Union funds (FEDER/COMPETE) for the project RECI/BBB-EBI/0179/2012 (FCOMP-01-0124-FEDER027462)

    First Measurement of the Charge Asymmetry in Beauty-Quark Pair Production

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    The difference in the angular distributions between beauty quarks and antiquarks, referred to as the charge asymmetry, is measured for the first time in b (b) over bar pair production at a hadron collider. The data used correspond to an integrated luminosity of 1.0 fb(-1) collected at 7 TeV center-of-mass energy in proton-proton collisions with the LHCb detector. The measurement is performed in three regions of the invariant mass of the b (b) over bar system. The results obtained are A(C)(b (b) over bar) (40 10(5) GeV/c(2)) = 1.6 +/- 1.7 +/- 0.6%,where A(C)(b (b) over bar) is defined as the asymmetry in the difference in rapidity between jets formed from the beauty quark and antiquark, where in each case the first uncertainty is statistical and the second systematic. The beauty jets are required to satisfy 2 20 GeV, and have an opening angle in the transverse plane Delta phi > 2.6 rad. These measurements are consistent with the predictions of the standard model

    Circulation dynamics and its influence on European and Mediterranean January–April climate over the past half millennium: results and insights from instrumental data, documentary evidence and coupled climate models

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    Frequency of Sahelian storm initiation enhanced over mesoscale soil-moisture patterns

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    Evapotranspiration of soil moisture can affect temperature and humidity in the lower atmosphere, and thereby the development of convective rain storms. Climate models have illustrated the importance of soil-moisture–precipitation feedbacks for weekly rainfall totals in semi-arid regions, such as the Sahel1. However, large variations exist between model feedbacks, and the mechanisms governing the strength and sign of the feedback are uncertain. Here, we use satellite observations of land surface temperatures and convective cloud cover over West Africa—collected during the wet seasons between 2006 and 2010—to determine the impact of soil moisture on rainfall in the Sahel. We show that variations in soil moisture on length scales of approximately 10–40 km exert a strong control on storm initiation—as evidenced by the appearance of convective cloud. The probability of convective initiation is doubled over strong soil-moisture gradients compared with that over uniform soil-moisture conditions. We find that 37% of all storm initiations analysed occurred over the steepest 25% of soil-moisture gradients. We conclude that heterogeneities in soil moisture on scales of tens of kilometres have a pronounced impact on rainfall in the Sahel, and suggest that similar processes may be important throughout the semi-arid tropics
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