Polarimetric variations of binary stars. II. Numerical simulations for circular and eccentric binaries in Mie scattering envelopes

We present numerical simulations of the periodic polarimetric variations produced by a binary star placed at the center of an empty spherical cavity inside a circumbinary ellipsoidal and optically thin envelope made of dust grains. Mie single-scattering is considered along with pre- and post-scattering extinction factors which produce a time-varying optical depth and affect the morphology of the periodic variations. We are interested in the effects that various parameters will have on the average polarization, the amplitude of the polarimetric variations, and the morphology of the variability. We show that the absolute amplitudes of the variations are smaller for Mie scattering than for Thomson scattering. Among the four grain types that we have studied, the highest polarizations are produced by grains with sizes in the range 0.1-0.2 micron. In general, the variations are seen twice per orbit. In some cases, because spherical dust grains have an asymmetric scattering function, the polarimetric curves produced also show variations seen once per orbit. Circumstellar disks produce polarimetric variations of greater amplitude than circumbinary envelopes. Another goal of these simulations is to see if the 1978 BME (Brown, McLean, & Emslie, ApJ, 68, 415) formalism, which uses a Fourier analysis of the polarimetric variations to find the orbital inclination for Thomson-scattering envelopes, can still be used for Mie scattering. We find that this is the case, if the amplitude of the variations is sufficient and the true inclinations is i_true > 45 deg. For eccentric orbits, the first-order coefficients of the Fourier fit, instead of second-order ones, can be used to find almost all inclinations.Comment: 23 pages, 5 figures, to be published in Astronomical Journa

Measurements, errors, and negative kinetic energy

An analysis of errors in measurement yields new insight into the penetration of quantum particles into classically forbidden regions. In addition to ``physical" values, realistic measurements yield ``unphysical" values which, we show, can form a consistent pattern. An experiment to isolate a particle in a classically forbidden region obtains negative values for its kinetic energy. These values realize the concept of a {\it weak value}, discussed in previous works.Comment: 22 pp, TAUP 1850-9

Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of glycoside hydrolase.

BackgroundGut microbiome metagenomics has revealed many protein families and domains found largely or exclusively in that environment. Proteins containing the GxGYxYP domain are over-represented in the gut microbiota, and are found in Polysaccharide Utilization Loci in the gut symbiont Bacteroides thetaiotaomicron, suggesting their involvement in polysaccharide metabolism, but little else is known of the function of this domain.ResultsGenomic context and domain architecture analyses support a role for the GxGYxYP domain in carbohydrate metabolism. Sparse occurrences in eukaryotes are the result of lateral gene transfer. The structure of the GxGYxYP domain-containing protein encoded by the BT2193 locus reveals two structural domains, the first composed of three divergent repeats with no recognisable homology to previously solved structures, the second a more familiar seven-stranded β/α barrel. Structure-based analyses including conservation mapping localise a presumed functional site to a cleft between the two domains of BT2193. Matching to a catalytic site template from a GH9 cellulase and other analyses point to a putative catalytic triad composed of Glu272, Asp331 and Asp333.ConclusionsWe suggest that GxGYxYP-containing proteins constitute a novel glycoside hydrolase family of as yet unknown specificity

Development of Container Free Sample Exposure for Synchrotron X-ray Footprinting.

The method of X-ray footprinting and mass spectrometry (XFMS) on large protein assemblies and membrane protein samples requires high flux density to overcome the hydroxyl radical scavenging reactions produced by the buffer constituents and the total protein content. Previously, we successfully developed microsecond XFMS using microfluidic capillary flow and a microfocused broadband X-ray source at the Advanced Light Source synchrotron beamlines, but the excessive radiation damage incurred when using capillaries prevented the full usage of a high-flux density beam. Here we present another significant advance for the XFMS method: the instrumentation of a liquid injection jet to deliver container free samples to the X-ray beam. Our preliminary experiments with a liquid jet at a bending magnet X-ray beamline demonstrate the feasibility of the approach and show a significant improvement in the effective dose for both the Alexa fluorescence assay and protein samples compared to conventional capillary flow methods. The combination of precisely controlled high dose delivery, shorter exposure times, and elimination of radiation damage due to capillary effects significantly increases the signal quality of the hydroxyl radical modification products and the dose-response data. This new approach is the first application of container free sample handling for XFMS and opens up the method for even further advances, such as high-quality microsecond time-resolved XFMS studies

Reply to ``Comment on `Insulating Behavior of λ\lambda-DNA on the Micron Scale' "

In our experiment, we found that the resistance of vacuum-dried $\lambda$-DNA exceeds $10^{14} \Omega$ at 295 K. Bechhoefer and Sen have raised a number of objections to our conclusion. We provide counter arguments to support our original conclusion.Comment: 1 page reply to comment, 1 figur

Distribution-Aware Sampling and Weighted Model Counting for SAT

Given a CNF formula and a weight for each assignment of values to variables, two natural problems are weighted model counting and distribution-aware sampling of satisfying assignments. Both problems have a wide variety of important applications. Due to the inherent complexity of the exact versions of the problems, interest has focused on solving them approximately. Prior work in this area scaled only to small problems in practice, or failed to provide strong theoretical guarantees, or employed a computationally-expensive maximum a posteriori probability (MAP) oracle that assumes prior knowledge of a factored representation of the weight distribution. We present a novel approach that works with a black-box oracle for weights of assignments and requires only an {\NP}-oracle (in practice, a SAT-solver) to solve both the counting and sampling problems. Our approach works under mild assumptions on the distribution of weights of satisfying assignments, provides strong theoretical guarantees, and scales to problems involving several thousand variables. We also show that the assumptions can be significantly relaxed while improving computational efficiency if a factored representation of the weights is known.Comment: This is a full version of AAAI 2014 pape

Development of a facility using robotics for testing automation of inertial instruments

The Integrated Robotics System Simulation (ROBSIM) was used to evaluate the performance of the PUMA 560 arm as applied to testing of inertial sensors. Results of this effort were used in the design and development of a feasibility test environment using a PUMA 560 arm. The implemented facility demonstrated the ability to perform conventional static inertial instrument tests (rotation and tumble). The facility included an efficient data acquisitions capability along with a precision test servomechanism function resulting in various data presentations which are included in the paper. Analysis of inertial instrument testing accuracy, repeatability and noise characteristics are provided for the PUMA 560 as well as for other possible commercial arm configurations. Another integral aspect of the effort was an in-depth economic analysis and comparison of robot arm testing versus use of contemporary precision test equipment

Exchange biasing of single-domain Ni nanoparticles spontaneously grown in an antiferromagnetic MnO matrix

Exchange biased composites of ferromagnetic single-domain Ni nanoparticles embedded within large grains of MnO have been prepared by reduction of Ni$_x$Mn$_{1-x}$O$_4$ phases in flowing hydrogen. The Ni precipitates are 15-30 nm in extent, and the majority are completely encased within the MnO matrix. The manner in which the Ni nanoparticles are spontaneously formed imparts a high ferromagnetic- antiferromagnetic interface/volume ratio, which results in substantial exchange bias effects. Exchange bias fields of up to 100 Oe are observed, in cases where the starting Ni content $x$ in the precursor Ni$_x$Mn$_{1-x}$O$_4$ phase is small. For particles of approximately the same size, the exchange bias leads to significant hardening of the magnetization, with the coercive field scaling nearly linearly with the exchange bias field.Comment: 6 pages PDFLaTeX with 9 figure

Experimental Status of Exotic Mesons and the GlueX Experiment

One of the unanswered and most fundamental questions in physics regards the nature of the confinement mechanism of quarks and gluons in QCD. Exotic hybrid mesons manifest gluonic degrees of freedom and their spectroscopy will provide the data necessary to test assumptions in lattice QCD and the specific phenomenology leading to confinement. Within the past two decades a number of experiments have put forth tantalizing evidence for the existence of exotic hybrid mesons in the mass range below 2 GeV. This talk represents an overview of the available data and what has been learned. In looking toward the future, the GlueX experiment at Jefferson Laboratory represents a new initiative that will perform detailed spectroscopy of the light-quark meson spectrum. This experiment and its capabilities will be reviewed.Comment: 10 pages, 8 figures, 2nd Meeting of the APS Topical Group on Hadron Physics GHP06, Nashville, TN (10/22-10/24/06

Universal 2-local Hamiltonian Quantum Computing

We present a Hamiltonian quantum computation scheme universal for quantum computation (BQP). Our Hamiltonian is a sum of a polynomial number (in the number of gates L in the quantum circuit) of time-independent, constant-norm, 2-local qubit-qubit interaction terms. Furthermore, each qubit in the system interacts only with a constant number of other qubits. The computer runs in three steps - starts in a simple initial product-state, evolves it for time of order L^2 (up to logarithmic factors) and wraps up with a two-qubit measurement. Our model differs from the previous universal 2-local Hamiltonian constructions in that it does not use perturbation gadgets, does not need large energy penalties in the Hamiltonian and does not need to run slowly to ensure adiabatic evolution.Comment: recomputed the necessary number of interactions, new geometric layout, added reference