1,206 research outputs found

    Рекомендации по ограничению динамических перенапряжений в обмотке ротора асинхронизированного турбогенератора

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    In this paper, a Volume-of-Fluid (VOF)-based approach for the Direct Numerical Simulation (DNS) of reactive mass transfer in gas–liquid flows is described. At the interface, local thermodynamic equilibrium is assumed and modelled by Henry's law. First numerical simulation results are presented for non-reactive and reactive mass transfer from rising gas bubbles to a surrounding liquid. For the evaluation of reactive mass transfer simulations with a consecutive, competitive reaction system in the liquid, a local selectivity is employed

    Abundance of actinobacteria and production of geosmin and 2-methylisoborneol in Danish streams and fish ponds

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    Occurrence of the odours geosmin and 2-methylisoborneol (MIB) in freshwater environments indicates that odour-producing organisms are commonly occurring. In the present study, we assumed actinomycetes to be a major source of the odours. Seasonal concentrations of odours and abundance of Actinobacteria, which includes actinomycetes and other G+ and high GC bacteria, were determined in one oligotrophic and two eutrophic freshwater streams, as well as in aquacultures connected to these streams, in Denmark. Concentrations of geosmin and MIB ranged from 2 to 9 ng l−1 and were lowest in the winter. Passage of stream water in the aquacultures increased the amount of geosmin and MIB by up to 55% and 110%, respectively. Densities of actinobacteria were determined by fluorescence in situ hybridization with catalyzed reporter deposition (CARD-FISH) technique and were found to make up from 4 to 38 × 107 cells l−1, corresponding to 3–9% of the total bacterial populations. The lowest densities of actinobacteria occurred in the winter. Filamentous bacteria targeted by the FISH probe made up about 2.7–38% (average was 22%) of the actinobacteria and were expected to be actinomycetes. Combined microautoradiography and CARD-FISH demonstrated that 10–38% (incorporation of 3H-thymidine) and 41–65% (incorporation of 3H-leucine) of the actinobacteria were metabolically active. The proportion of active actinobacteria increased up to 2-fold during passage of stream water in the aquacultures, and up to 98% of the cells became active. Sequencing of 16S rRNA genes in 8 bacterial isolates with typical actinomycete morphology from the streams and ponds demonstrated that most of them belonged to the genus Streptomyces. The isolated actinomycetes produced geosmin at rates from 0.1 to 35 ag geosmin bacterium−1 h−1. MIB was produced at similar rates in 5 isolates, whereas no MIB was produced by three of the isolates. Addition of the odours to stream water demonstrated that indigenous stream bacteria were capable of reducing the odours, and that enrichment with LB medium stimulated the degradation. Our study shows that bacterial communities in freshwater include geosmin- and MIB-producing actinobacteria. However, the mechanisms controlling production as well as degradation of the odours in natural waters appear complex and require further research

    Solidification of small para-H2 clusters at zero temperature

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    We have determined the ground-state energies of para-H2_2 clusters at zero temperature using the diffusion Monte Carlo method. The liquid or solid character of each cluster is investigated by restricting the phase through the use of proper importance sampling. Our results show inhomogeneous crystallization of clusters, with alternating behavior between liquid and solid phases up to N=55. From there on, all clusters are solid. The ground-state energies in the range N=13--75 are established and the stable phase of each cluster is determined. In spite of the small differences observed between the energy of liquid and solid clusters, the corresponding density profiles are significantly different, feature that can help to solve ambiguities in the determination of the specific phase of H2_2 clusters.Comment: 17 pages, accepted for publication in J. Phys. Chem.

    Does negative auto-regulation increase gene duplicability?

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    BACKGROUND: A prerequisite for a duplication to spread through and persist in a given population is retaining expression of both gene copies. Yet changing a gene's dosage is frequently detrimental to fitness. Consequently, dosage-sensitive genes are less likely to duplicate. However, in cases where the level of gene product is controlled, via negative feedback, by its own abundance, an increase in gene copy number can in principle be decoupled from an increase in protein while both copies remain expressed. Using data from the transcriptional networks of E. coli and S. cerevisiae, we test the hypothesis that genes under negative auto-regulation show enhanced duplicability. RESULTS: Controlling for several known correlates of duplicability, we find no statistically significant support in either E. coli or S. cerevisiae that transcription factors under negative auto-regulation hold a duplicability advantage over transcription factors with no auto-regulation. CONCLUSION: Based on the analysis of transcriptional networks in E. coli and S. cerevisiae, there is no evidence that negative auto-regulation has contributed, on a genome-wide scale, to the variability in gene family sizes in these species

    Transition from axi- to nonaxisymmetric dynamo modes in spherical convection models of solar-like stars

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    Context. Both dynamo theory and observations of stellar large-scale magnetic fields suggest a change from nearly axisymmetric configurations at solar rotation rates to nonaxisymmetric configurations for rapid rotation. Aims. We seek to understand this transition using numerical simulations. Methods. We use three-dimensional simulations of turbulent magnetohydrodynamic convection in spherical shell wedges and considered rotation rates between 1 and 31 times the solar value. Results. We find a transition from axi- to nonaxisymmetric solutions at around 1.8 times the solar rotation rate. This transition coincides with a change in the rotation profile from antisolar- to solar-like differential rotation with a faster equator and slow poles. In the solar-like rotation regime, the field configuration consists of an axisymmetric oscillatory field accompanied by an m = 1 azimuthal mode (two active longitudes), which also shows temporal variability. At slow (rapid) rotation, the axisymmetric (nonaxisymmetric) mode dominates. The axisymmetric mode produces latitudinal dynamo waves with polarity reversals, while the nonaxisymmetric mode often exhibits a slow drift in the rotating reference frame and the strength of the active longitudes changes cyclically over time between the different hemispheres. In the majority of cases we find retrograde waves, while prograde waves are more often found from observations. Most of the obtained dynamo solutions exhibit cyclic variability either caused by latitudinal or azimuthal dynamo waves. In an activity-period diagram, the cycle lengths normalized by the rotation period form two different populations as a function of rotation rate or magnetic activity level. The slowly rotating axisymmetric population lies close to what in observations is called the inactive branch, where the stars are believed to have solar-like differential rotation, while the rapidly rotating models are close to the superactive branch with a declining cycle to rotation frequency ratio and an increasing rotation rate. Conclusions. We can successfully reproduce the transition from axi- to nonaxisymmetric dynamo solutions for high rotation rates, but high-resolution simulations are required to limit the effect of rotational quenching of convection at rotation rates above 20 times the solar value.Peer reviewe

    KDM2A integrates DNA and histone modification signals through a CXXC/PHD module and direct interaction with HP1.

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    Functional genomic elements are marked by characteristic DNA and histone modification signatures. How combinatorial chromatin modification states are recognized by epigenetic reader proteins and how this is linked to their biological function is largely unknown. Here we provide a detailed molecular analysis of chromatin recognition by the lysine demethylase KDM2A. Using biochemical approaches we identify a nucleosome interaction module within KDM2A consisting of a CXXC type zinc finger, a PHD domain and a newly identified Heterochromatin Protein 1 (HP1) interaction motif that mediates direct binding between KDM2A and HP1. This nucleosome interaction module enables KDM2A to decode nucleosomal H3K9me3 modification in addition to CpG methylation signals. The multivalent engagement with DNA and HP1 results in a nucleosome binding circuit in which KDM2A can be recruited to H3K9me3-modified chromatin through HP1, and HP1 can be recruited to unmodified chromatin by KDM2A. A KDM2A mutant deficient in HP1-binding is inactive in an in vivo overexpression assay in zebrafish embryos demonstrating that the HP1 interaction is essential for KDM2A function. Our results reveal a complex regulation of chromatin binding for both KDM2A and HP1 that is modulated by DNA- and H3K9-methylation, and suggest a direct role for KDM2A in chromatin silencing

    Epigenetics as a mechanism driving polygenic clinical drug resistance

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    Aberrant methylation of CpG islands located at or near gene promoters is associated with inactivation of gene expression during tumour development. It is increasingly recognised that such epimutations may occur at a much higher frequency than gene mutation and therefore have a greater impact on selection of subpopulations of cells during tumour progression or acquisition of resistance to anticancer drugs. Although laboratory-based models of acquired resistance to anticancer agents tend to focus on specific genes or biochemical pathways, such 'one gene : one outcome' models may be an oversimplification of acquired resistance to treatment of cancer patients. Instead, clinical drug resistance may be due to changes in expression of a large number of genes that have a cumulative impact on chemosensitivity. Aberrant CpG island methylation of multiple genes occurring in a nonrandom manner during tumour development and during the acquisition of drug resistance provides a mechanism whereby expression of multiple genes could be affected simultaneously resulting in polygenic clinical drug resistance. If simultaneous epigenetic regulation of multiple genes is indeed a major driving force behind acquired resistance of patients' tumour to anticancer agents, this has important implications for biomarker studies of clinical outcome following chemotherapy and for clinical approaches designed to circumvent or modulate drug resistance
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