1,490 research outputs found
Genetically discrete populations of Trypanosoma congolense from livestock on the Kenyan coast
Twenty-seven stocks of Nannomonas trypanosomes isolated from livestock in 1982 on a ranch at Kilifi on the Kenyan coast were characterized by isoenzyme electrophoresis and by the abilities of the parasite's DNA to hybridize to two repetitive sequence DNA probes. Allthe Kilifi stocks which were examined had isoenzyme patterns which were markedly different from the 75 patterns previously described from 78 stocks of Trypanosoma congolense. On average only 15% of the enzyme bands present in the Kilifi stocks were present in those stocks of T. congolense which had previously been surveyed for isoenzymes. The DNA from all the Kilifi stocks which had been examined for isoenzymes hybridized with only the repetitive sequence probe isolated from a clone of a Kilifi stock. In contrast, the DNA from all 27 Kilifi stocks failed to hybridize with a repetitive sequence probe isolated from a clone from a different stock of T. congolense. Thus, the trypanosomes in all the Kilifi stocks examined were both phenotypically and genotypically discrete. These genetically discrete trypanosomes have also been detected in 2 stocks isolated from livestock from another location on the Kenyan coast. The results show that there is a wide range of genetic heterogeneity within the trypanosomes currently classified as T. congolense. We suggest that the limits of this genetic heterogeneity could represent incipient speciatio
p-species integrable reaction-diffusion processes
We consider a process in which there are p-species of particles, i.e.
A_1,A_2,...,A_p, on an infinite one-dimensional lattice. Each particle
can diffuse to its right neighboring site with rate , if this site is not
already occupied. Also they have the exchange interaction A_j+A_i --> A_i+A_j
with rate We study the range of parameters (interactions) for which
the model is integrable. The wavefunctions of this multi--parameter family of
integrable models are found. We also extend the 2--species model to the case in
which the particles are able to diffuse to their right or left neighboring
sites.Comment: 16 pages, LaTe
Group report: What are the observed and anticipated meteorological and climatic responses to aerosol forcing?
An interacting spin flip model for one-dimensional proton conduction
A discrete asymmetric exclusion process (ASEP) is developed to model proton
conduction along one-dimensional water wires. Each lattice site represents a
water molecule that can be in only one of three states; protonated,
left-pointing, and right-pointing. Only a right(left)-pointing water can accept
a proton from its left(right). Results of asymptotic mean field analysis and
Monte-Carlo simulations for the three-species, open boundary exclusion model
are presented and compared. The mean field results for the steady-state proton
current suggest a number of regimes analogous to the low and maximal current
phases found in the single species ASEP [B. Derrida, Physics Reports, {\bf
301}, 65-83, (1998)]. We find that the mean field results are accurate
(compared with lattice Monte-Carlo simulations) only in the certain regimes.
Refinements and extensions including more elaborate forces and pore defects are
also discussed.Comment: 13pp, 6 fig
Asymmetric exclusion process with next-nearest-neighbor interaction: some comments on traffic flow and a nonequilibrium reentrance transition
We study the steady-state behavior of a driven non-equilibrium lattice gas of
hard-core particles with next-nearest-neighbor interaction. We calculate the
exact stationary distribution of the periodic system and for a particular line
in the phase diagram of the system with open boundaries where particles can
enter and leave the system. For repulsive interactions the dynamics can be
interpreted as a two-speed model for traffic flow. The exact stationary
distribution of the periodic continuous-time system turns out to coincide with
that of the asymmetric exclusion process (ASEP) with discrete-time parallel
update. However, unlike in the (single-speed) ASEP, the exact flow diagram for
the two-speed model resembles in some important features the flow diagram of
real traffic. The stationary phase diagram of the open system obtained from
Monte Carlo simulations can be understood in terms of a shock moving through
the system and an overfeeding effect at the boundaries, thus confirming
theoretical predictions of a recently developed general theory of
boundary-induced phase transitions. In the case of attractive interaction we
observe an unexpected reentrance transition due to boundary effects.Comment: 12 pages, Revtex, 7 figure
Single-File Diffusion of Atomic and Colloidal Systems: Asymptotic Laws
In this work we present a general derivation of the non-Fickian behavior for
the self-diffusion of identically interacting particle systems with excluded
mutual passage. We show that the conditional probability distribution of
finding a particle at position after time , when the particle was
located at at , follows a Gaussian distribution in the long-time
limit, with variance for overdamped systems and with
variance for classical systems. The asymptotic behavior of the
mean-squared displacement, , is shown to be independent of the nature of
interactions for homogeneous systems in the fluid state. Moreover, the
long-time behavior of self-diffusion is determined by short-time and large
scale collective density fluctuations.Comment: 4 page
Persistence in the One-Dimensional A+B -> 0 Reaction-Diffusion Model
The persistence properties of a set of random walkers obeying the A+B -> 0
reaction, with equal initial density of particles and homogeneous initial
conditions, is studied using two definitions of persistence. The probability,
P(t), that an annihilation process has not occurred at a given site has the
asymptotic form , where is the
persistence exponent (``type I persistence''). We argue that, for a density of
particles , this non-trivial exponent is identical to that governing
the persistence properties of the one-dimensional diffusion equation, where
. In the case of an initially low density, , we find asymptotically. The probability that a site
remains unvisited by any random walker (``type II persistence'') is also
investigated and found to decay with a stretched exponential form, , provided . A heuristic argument
for this behavior, based on an exactly solvable toy model, is presented.Comment: 11 RevTeX pages, 19 EPS figure
Exact time-dependent correlation functions for the symmetric exclusion process with open boundary
As a simple model for single-file diffusion of hard core particles we
investigate the one-dimensional symmetric exclusion process. We consider an
open semi-infinite system where one end is coupled to an external reservoir of
constant density and which initially is in an non-equilibrium state
with bulk density . We calculate the exact time-dependent two-point
density correlation function and the mean and variance of the integrated average net flux
of particles that have entered (or left) the system up to time .
We find that the boundary region of the semi-infinite relaxing system is in a
state similar to the bulk state of a finite stationary system driven by a
boundary gradient. The symmetric exclusion model provides a rare example where
such behavior can be proved rigorously on the level of equal-time two-point
correlation functions. Some implications for the relaxational dynamics of
entangled polymers and for single-file diffusion in colloidal systems are
discussed.Comment: 11 pages, uses REVTEX, 2 figures. Minor typos corrected and reference
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Cyclic sediment deposition by orbital forcing in the Miocene wetland of western Amazonia? New insights from a multidisciplinary approach
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