Linear Self-Motion Cues Support the Spatial Distribution and Stability of Hippocampal Place Cells

The vestibular system provides a crucial component of place-cell and head-direction cell activity [1-7]. Otolith signals are necessary for head-direction signal stability and associated behavior [8, 9], and the head-direction signal's contribution to parahippocampal spatial representations [10-14] suggests that place cells may also require otolithic information. Here, we demonstrate that self-movement information from the otolith organs is necessary for the development of stable place fields within and across sessions. Place cells in otoconia-deficient tilted mice showed reduced spatial coherence and formed place fields that were located closer to environmental boundaries, relative to those of control mice. These differences reveal an important otolithic contribution to place-cell functioning and provide insight into the cognitive deficits associated with otolith dysfunction

Magic Numbers for the Photoelectron Anisotropy in Li-Doped Dimethyl Ether Clusters

Photoelectron velocity map imaging of Li(CH$_3$OCH$_3$)$_n$ clusters (1 $\leq$ n $\leq$ 175) is used to search for magic numbers related to the photoelectron anisotropy. Comparison with density functional calculations reveals magic numbers at n=4, 5, and 6, resulting from the symmetric charge distribution with high s-character of the highest occupied molecular orbital. Since each of these three cluster sizes correspond to the completion of a first coordination shell, they can be considered as 'isomeric motifs of the first coordination shell'. Differences in the photoelectron anisotropy, the vertical ionization energies and the enthalpies of vaporization between Li(CH$_3$OCH$_3$)$_n$ and Na(CH$_3$OCH$_3$)$_n$ can be rationalized in terms of differences in their solvation shells, atomic ionization energies, polarizabilities, metal-oxygen bonds, ligand-ligand interactions, and by cooperative effects

Improvements to an Explicit Algebraic Stress Model for Turbulent Jet Mixing Predictions

Modifications to key coefficients in a k E based explicit algebraic stress model (EASM) are examined with the objective of improving the prediction of turbulent jet flows. The pressure strain coefficient, C2 and the turbulent diffusion coefficients, k and E were investigated. For a series of benchmark subsonic jets at heated and unheated conditions, lowering C2 from the default value of 0.36 to 0.10 resulted in a significant improvement in the jet mixing, when compared to experimental data. Changing k and E from default values of 1.00 and 1.4489, respectively, to 0.50 and 0.7244, respectively, improved the initial mixing rate, while reducing the farfield mixing rate and the peak turbulent kinetic energy along the centerline. A high-speed mixing layer was also investigated for performance of baseline and modified EASM coefficients, with similar results as for the jet cases. A flat plate boundary layer was briefly examined to determine the effects of changing the coefficients on the turbulent skin friction coefficient. The change to the pressure strain coefficient, C2 = 0.10 is recommended for future EASM calculation of jets flow; however, it is also recommended that the diffusion coefficients remain at their default values

Implementation and Validation of the Chien k-epsilon Turbulence Model in the Wind Navier-Stokes Code

The two equation k-epsilon turbulence model of Chien has been implemented in the WIND Navier-Stokes flow solver. Details of the numerical solution algorithm, initialization procedure, and stability enhancements are described. Results obtained with this version of the model are compared with those from the Chien k-epsilon model in the NPARC Navier-Stokes code and from the WIND SST model for three validation cases: the incompressible flow over a smooth flat plate, the incompressible flow over a backward facing step, and the shock-induced flow separation inside a transonic diffuser. The k-epsilon model results indicate that the WIND model functions very similarly to that in NPARC, though the WIND code appears to he slightly more accurate in the treatment of the near-wall region. Comparisons of the k-epsilon model results with those from the SST model were less definitive, as each model exhibited strengths and weaknesses for each particular case

Use of Navier-Stokes methods for the calculation of high-speed nozzle flow fields

Flows through three reference nozzles have been calculated to determine the capabilities and limitations of the widely used Navier-Stokes solver, PARC. The nozzles examined have similar dominant flow characteristics as those considered for supersonic transport programs. Flows from an inverted velocity profile (IVP) nozzle, an under expanded nozzle, and an ejector nozzle were examined. PARC calculations were obtained with its standard algebraic turbulence model, Thomas, and the two-equation turbulence model, Chien k-epsilon. The Thomas model was run with the default coefficient of mixing set at both 0.09 and a larger value of 0.13 to improve the mixing prediction. Calculations using the default value substantially underpredicted the mixing for all three flows. The calculations obtained with the higher mixing coefficient better predicted mixing in the IVP and underexpanded nozzle flows but adversely affected PARC's convergence characteristics for the IVP nozzle case. The ejector nozzle case did not converge with the Thomas model and the higher mixing coefficient. The Chien k-epsilon results were in better agreement with the experimental data overall than were those of the Thomas run with the default mixing coefficient, but the default boundary conditions for k and epsilon underestimated the levels of mixing near the nozzle exits

Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression

BACKGROUND: There are many potential sources of variability in a microarray experiment. Variation can arise from many aspects of the collection and processing of samples for gene expression analysis. Oligonucleotide-based arrays are thought to minimize one source of variability as identical oligonucleotides are expected to recognize the same transcripts during hybridization. RESULTS: We demonstrate that although the probes on the U133A GeneChip arrays are identical in sequence to probes designed for the U133 Plus 2.0 arrays the values obtained from an experimental hybridization can be quite different. Nearly half of the probesets in common between the two array types can produce slightly different values from the same sample. Nearly 70% of the individual probes in these probesets produced array specific differences. CONCLUSION: The context of the probe may also contribute some bias to the final measured value of gene expression. At a minimum, this should add an extra level of caution when considering the direct comparison of experiments performed in two microarray formats. More importantly, this suggests that it may not be possible to know which value is the most accurate representation of a biological sample when comparing two formats

Implementation and Validation of a Laminar-to-Turbulent Transition Model in the Wind-US Code

A bypass transition model has been implemented in the Wind-US Reynolds Averaged Navier-Stokes (RANS) solver. The model is based on the Shear Stress Transport (SST) turbulence model and was built starting from a previous SST-based transition model. Several modifications were made to enable (1) consistent solutions regardless of flow field initialization procedure and (2) fully turbulent flow beyond the transition region. This model is intended for flows where bypass transition, in which the transition process is dominated by large freestream disturbances, is the key transition mechanism as opposed to transition dictated by modal growth. Validation of the new transition model is performed for flows ranging from incompressible to hypersonic conditions

Wind-US Code Contributions to the First AIAA Shock Boundary Layer Interaction Prediction Workshop

This report discusses the computations of a set of shock wave/turbulent boundary layer interaction (SWTBLI) test cases using the Wind-US code, as part of the 2010 American Institute of Aeronautics and Astronautics (AIAA) shock/boundary layer interaction workshop. The experiments involve supersonic flows in wind tunnels with a shock generator that directs an oblique shock wave toward the boundary layer along one of the walls of the wind tunnel. The Wind-US calculations utilized structured grid computations performed in Reynolds-averaged Navier-Stokes mode. Four turbulence models were investigated: the Spalart-Allmaras one-equation model, the Menter Baseline and Shear Stress Transport k-omega two-equation models, and an explicit algebraic stress k-omega formulation. Effects of grid resolution and upwinding scheme were also considered. The results from the CFD calculations are compared to particle image velocimetry (PIV) data from the experiments. As expected, turbulence model effects dominated the accuracy of the solutions with upwinding scheme selection indicating minimal effects

A proposed mechanism for enhanced water-conservation in egg clutches of the Mexican Kingsnake, Lampropeltis mexicana (Serpentes: Colubridae)

A postura de ovos em um substrato úmido minimiza o estresse hídrico de ovos de répteis com casca coriácea, pois permite que absorvam água através da casca permeável. Esse ganho de água contribui para a redução da perda de água em ovos agregados. Demostramos aqui essa característica de conservação de água em ovos da serpente Lampropeltis mexicana em um experimento de balanco hídrico investigando tanto desovas naturais como ovos arranjados experimentalmente em grupos. As taxas de perda de água dos ovos continuam a diminuir à medida que mais ovos são adicionados ao agregado, com um limiar de aproximadamente 15 ovos. Não há redução adicional da taxa de perda de água em um agregado de 20 ovos, número maior que o tamanho típico máximo da desova natural dessa espécie. Correntes de ar seco dirigidas sobre a desova provocam o desaparecimento dessa característica de conservação de água, mas esta reaparece quando o ar está imóvel (desligando-se a corrente de ar). Essa é a primeira vez que um aumento na pressão de vapor de água em um agregado de ovos é demonstrado experimentalmente; os resultados sugerem que a postura de ovos agregados pode beneficiar o desenvolvimento por meio da conservação de umidade.Laying eggs on a wet substrate minimizes water stress for flexible-shelled reptile eggs because they absorb water through the permeable shell. This water gain contributes to reduced water-loss in aggregated eggs. This water-conserving feature is demonstrated in eggs of Lampropeltis mexicana in a water-balance experiment investigating both naturally laid clutches and eggs in arranged clusters. Water-loss rates of eggs decrease as more eggs are added to the aggregation, with a threshold at approximately 15 eggs. There is no further reduction in water-loss rate for eggs in an aggregation of 20, which exceeds the typical maximum for natural clutch size in this species. Blowing dry air over the egg clutch causes this water-conserving feature to disappear, but it re-appears when the air is still (air current turned off). This is the first time that an increase in water-vapor pressure in an aggregation of eggs has been demonstrated experimentally; the results suggest that laying aggregations of eggs may benefit development through moisture conservation