Wigner crystals of ions as quantum hard drives

Atomic systems in regular lattices are intriguing systems for implementing ideas in quantum simulation and information processing. Focusing on laser cooled ions forming Wigner crystals in Penning traps, we find a robust and simple approach to engineering non-trivial 2-body interactions sufficient for universal quantum computation. We then consider extensions of our approach to the fast generation of large cluster states, and a non-local architecture using an asymmetric entanglement generation procedure between a Penning trap system and well-established linear Paul trap designs.Comment: 5 pages, 4 figure

Ion induced density bubble in a strongly correlated one dimensional gas

We consider a harmonically trapped Tonks-Girardeau gas of impenetrable bosons in the presence of a single embedded ion, which is assumed to be tightly confined in a RF trap. In an ultracold ion-atom collision the ion's charge induces an electric dipole moment in the atoms which leads to an attractive $r^{-4}$ potential asymptotically. We treat the ion as a static deformation of the harmonic trap potential and model its short range interaction with the gas in the framework of quantum defect theory. The molecular bound states of the ionic potential are not populated due to the lack of any possible relaxation process in the Tonks-Girardeau regime. Armed with this knowledge we calculate the density profile of the gas in the presence of a central ionic impurity and show that a density \textit{bubble} of the order of a micron occurs around the ion for typical experimental parameters. From these exact results we show that an ionic impurity in a Tonks gas can be described using a pseudopotential, allowing for significantly easier treatment.Comment: Accepted for publication in Physical Review A (Rapid Communications)

Contribution of introns to the species diversity associated with the apicomplexan parasite, Neospora caninum.

Neospora caninum is an intracellular parasite considered a leading cause of bovine reproduction failure worldwide, and a serious neurological disease of canines. Transplacental transmission in intermediate hosts is considered the most efficient means of transmission, which strictly involves asexual reproduction. Nonetheless, extensive genetic diversity has been reported within the species. What is yet to be elucidated are the major drivers of such diversity, and their impact on important parasite phenotypes such as virulence. Instead of protein-encoding sequences, genome and transcriptome data were used to investigate SNPs in introns between two distinct N. caninum isolates, with reported differences in pathogenicity. Variant analysis identified 840 and 501 SNPs within intergenic regions and introns, respectively, distinctly concentrated on chromosomes VI and XI, whereas the rest of the genome was monomorphic in comparison. Gene ontologies for SNP-dense intron-containing genes included ATP binding, transmembrane transport, protein kinase activity, and transcription and translation processes. This study shows that variation in non-coding DNA is contributing to N. caninum intraspecies genetic diversity, and potentially influencing and contributing to important parasite mechanisms. Finally, we present an assembled and annotated N. caninum apicoplast genome and show that this essential organelle is highly conserved between the two isolates, and related Coccidia

Staying adiabatic with unknown energy gap

We introduce an algorithm to perform an optimal adiabatic evolution that operates without an apriori knowledge of the system spectrum. By probing the system gap locally, the algorithm maximizes the evolution speed, thus minimizing the total evolution time. We test the algorithm on the Landau-Zener transition and then apply it on the quantum adiabatic computation of 3-SAT: The result is compatible with an exponential speed-up for up to twenty qubits with respect to classical algorithms. We finally study a possible algorithm improvement by combining it with the quantum Zeno effect.Comment: 4 pages, 4 figure

Genome wide identification of mutational hotspots in the apicomplexan parasite neospora caninum and the implications for virulence

© The Author(s) 2018. Neospora caninum is an apicomplexan parasite responsible for neosporosis, a disease causing hind limb paralysis in dogs and abortion in cattle, resulting in substantial economic losses to beef and dairy industries. Marked differences in pathogenicity exist between N. caninum strains suggesting that intrinsic genetic differences exist between them. These differences likely exist in genes expressed during the tachyzoite lifecycle stage which is responsible for the pathogenesis of neosporosis. An improved understanding of these genetic differences is essential to understanding N. caninum virulence, though such knowledge is scarce. Using a variant detection workflow we compared the tachyzoite transcriptomes of two N. caninum strains with different virulence properties: NC-Liverpool (virulent) and NC-Nowra (avirulent). This workflow identified 3130 SNPs and 6123 indels between the strains, and nine markers capturing 30 variants were Sanger sequenced for both strains. Sequencing of these loci was extended to an additional eight strains and subsequent phylogenetic analysis supported a genetic population structure comprised of two major clades with no geographical segregation. Sequence polymorphisms within coding regions of tachyzoiteassociated genes were concentrated on chromosomes XI and XII, with 19 distinct tachyzoite-associated SNP hotspot regions identified within coding regions of the N. caninum nuclear genome. The variants were predominantly located in loci associated with protein binding, protein-protein interactions, transcription, and translation. Furthermore, 468 nonsynonymous SNPs identified within protein-coding genes were associated with protein kinase activity, protein binding, protein phosphorylation, and proteolysis. This work may implicate these processes and the specific proteins involved as novel effectors of N. caninum tachyzoite virulence

Optimal control technique for Many Body Quantum Systems dynamics

We present an efficient strategy for controlling a vast range of non-integrable quantum many body one-dimensional systems that can be merged with state-of-the-art tensor network simulation methods like the density Matrix Renormalization Group. To demonstrate its potential, we employ it to solve a major issue in current optical-lattice physics with ultra-cold atoms: we show how to reduce by about two orders of magnitudes the time needed to bring a superfluid gas into a Mott insulator state, while suppressing defects by more than one order of magnitude as compared to current experiments [1]. Finally, we show that the optimal pulse is robust against atom number fluctuations.Comment: 5 pages, 4 figures, published versio

General classification and analysis of neutron β-decay experiments

A general analysis of the sensitivities of neutron β-decay experiments to manifestations of possible interaction beyond the standard model is carried out. In a consistent fashion, we take into account all known radiative and recoil corrections arising in the standard model. This provides a description of angular correlations in neutron decay in terms of one parameter, which is accurate to the level of ~10-5. Based on this general expression, we present an analysis of the sensitivities to new physics for selected neutron decay experiments. We emphasize that the usual parametrization of experiments in terms of the tree-level coefficients a,A, and B is inadequate when the experimental sensitivities are at the same or higher level relative to the size of the corrections to the tree-level description