626 research outputs found
Angular velocity integration in a fly heading circuit
Many animals maintain an internal representation of their heading as they move through their surroundings. Such a compass representation was recently discovered in a neural population in the Drosophila melanogaster central complex, a brain region implicated in spatial navigation. Here, we use two-photon calcium imaging and electrophysiology in head-fixed walking flies to identify a different neural population that conjunctively encodes heading and angular velocity, and is excited selectively by turns in either the clockwise or counterclockwise direction. We show how these mirror-symmetric turn responses combine with the neurons' connectivity to the compass neurons to create an elegant mechanism for updating the fly's heading representation when the animal turns in darkness. This mechanism, which employs recurrent loops with an angular shift, bears a resemblance to those proposed in theoretical models for rodent head direction cells. Our results provide a striking example of structure matching function for a broadly relevant computation
String-like Clusters and Cooperative Motion in a Model Glass-Forming Liquid
A large-scale molecular dynamics simulation is performed on a glass-forming
Lennard-Jones mixture to determine the nature of dynamical heterogeneities
which arise in this model fragile liquid. We observe that the most mobile
particles exhibit a cooperative motion in the form of string-like paths
(``strings'') whose mean length and radius of gyration increase as the liquid
is cooled. The length distribution of the strings is found to be similar to
that expected for the equilibrium polymerization of linear polymer chains.Comment: 6 pages of RevTex, 6 postscript figures, uses epsf.st
Exact Three Dimensional Casimir Force Amplitude, -function and Binder's Cumulant Ratio: Spherical Model Results
The three dimensional mean spherical model on a hypercubic lattice with a
film geometry under periodic boundary conditions is
considered in the presence of an external magnetic field . The universal
Casimir amplitude and the Binder's cumulant ratio are calculated
exactly and found to be and
A discussion on the relations
between the finite temperature -function, usually defined for quantum
systems, and the excess free energy (due to the finite-size contributions to
the free energy of the system) scaling function is presented. It is
demonstrated that the -function of the model equals 4/5 at the bulk critical
temperature . It is analytically shown that the excess free energy is a
monotonically increasing function of the temperature and of the magnetic
field in the vicinity of This property is supposed to hold for any
classical -dimensional model with a film geometry under periodic
boundary conditions when . An analytical evidence is also presented to
confirm that the Casimir force in the system is negative both below and in the
vicinity of the bulk critical temperature Comment: 12 pages revtex, one eps figure, submitted to Phys. Rev E A set of
references added with the text needed to incorporate them. Small changes in
the title and in the abstrac
Critical dynamics in thin films
Critical dynamics in film geometry is analyzed within the field-theoretical
approach. In particular we consider the case of purely relaxational dynamics
(Model A) and Dirichlet boundary conditions, corresponding to the so-called
ordinary surface universality class on both confining boundaries. The general
scaling properties for the linear response and correlation functions and for
dynamic Casimir forces are discussed. Within the Gaussian approximation we
determine the analytic expressions for the associated universal scaling
functions and study quantitatively in detail their qualitative features as well
as their various limiting behaviors close to the bulk critical point. In
addition we consider the effects of time-dependent fields on the
fluctuation-induced dynamic Casimir force and determine analytically the
corresponding universal scaling functions and their asymptotic behaviors for
two specific instances of instantaneous perturbations. The universal aspects of
nonlinear relaxation from an initially ordered state are also discussed
emphasizing the different crossovers that occur during this evolution. The
model considered is relevant to the critical dynamics of actual uniaxial
ferromagnetic films with symmetry-preserving conditions at the confining
surfaces and for Monte Carlo simulations of spin system with Glauber dynamics
and free boundary conditions.Comment: 64 pages, 21 figure
Interface localisation-delocalisation transition in a symmetric polymer blend: a finite-size scaling Monte Carlo study
Using extensive Monte Carlo simulations we study the phase diagram of a
symmetric binary (AB) polymer blend confined into a thin film as a function of
the film thickness D. The monomer-wall interactions are short ranged and
antisymmetric, i.e, the left wall attracts the A-component of the mixture with
the same strength as the right wall the B-component, and give rise to a first
order wetting transition in a semi-infinite geometry. The phase diagram and the
crossover between different critical behaviors is explored. For large film
thicknesses we find a first order interface localisation/delocalisation
transition and the phase diagram comprises two critical points, which are the
finite film width analogies of the prewetting critical point. Using finite size
scaling techniques we locate these critical points and present evidence of 2D
Ising critical behavior. When we reduce the film width the two critical points
approach the symmetry axis of the phase diagram and for we encounter a tricritical point. For even smaller film thickness the
interface localisation/delocalisation transition is second order and we find a
single critical point at .
Measuring the probability distribution of the interface position we determine
the effective interaction between the wall and the interface. This effective
interface potential depends on the lateral system size even away from the
critical points. Its system size dependence stems from the large but finite
correlation length of capillary waves. This finding gives direct evidence for a
renormalization of the interface potential by capillary waves in the framework
of a microscopic model.Comment: Phys.Rev.
Escherichia coli Frameshift Mutation Rate Depends on the Chromosomal Context but Not on the GATC Content Near the Mutation Site
Different studies have suggested that mutation rate varies at different positions in the genome. In this work we analyzed if the chromosomal context and/or the presence of GATC sites can affect the frameshift mutation rate in the Escherichia coli genome. We show that in a mismatch repair deficient background, a condition where the mutation rate reflects the fidelity of the DNA polymerization process, the frameshift mutation rate could vary up to four times among different chromosomal contexts. Furthermore, the mismatch repair efficiency could vary up to eight times when compared at different chromosomal locations, indicating that detection and/or repair of frameshift events also depends on the chromosomal context. Also, GATC sequences have been proved to be essential for the correct functioning of the E. coli mismatch repair system. Using bacteriophage heteroduplexes molecules it has been shown that GATC influence the mismatch repair efficiency in a distance- and number-dependent manner, being almost nonfunctional when GATC sequences are located at 1 kb or more from the mutation site. Interestingly, we found that in E. coli genomic DNA the mismatch repair system can efficiently function even if the nearest GATC sequence is located more than 2 kb away from the mutation site. The results presented in this work show that even though frameshift mutations can be efficiently generated and/or repaired anywhere in the genome, these processes can be modulated by the chromosomal context that surrounds the mutation site
The impact of ENSO on Southern African rainfall in CMIP5 ocean atmosphere coupled climate models
We study the ability of 24 ocean atmosphere global coupled models from the Coupled Model Intercomparison Project 5 (CMIP5) to reproduce the teleconnections between El Niño Southern Oscillation (ENSO) and Southern African rainfall in austral summer using historical forced simulations, with a focus on the atmospheric dynamic associated with El Niño. Overestimations of summer rainfall occur over Southern Africa in all CMIP5 models. Abnormal westward extensions of ENSO patterns are a common feature of all CMIP5 models, while the warming of the Indian Ocean that happens during El Niño is not correctly reproduced. This could impact the teleconnection between ENSO and Southern African rainfall which is represented with mixed success in CMIP5 models. Large-scale anomalies of suppressed deep-convection over the tropical maritime continent and enhanced convection from the central to eastern Pacific are correctly simulated. However, regional biases occur above Africa and the Indian Ocean, particularly in the position of the deep convection anomalies associated with El Niño, which can lead to the wrong sign in rainfall anomalies in the northwest part of South Africa. From the near-surface to mid-troposphere, CMIP5 models underestimate the observed anomalous pattern of pressure occurring over Southern Africa that leads to dry conditions during El Niño years
Ferritin is secreted via 2 distinct nonclassical vesicular pathways
Ferritin turnover plays a major role in tissue iron homeostasis, and ferritin malfunction is associated with impaired iron homeostasis and neurodegenerative diseases. In most eukaryotes, ferritin is considered an intracellular protein that stores iron in a nontoxic and bioavailable form. In insects, ferritin is a classically secreted protein and plays a major role in systemic iron distribution. Mammalian ferritin lacks the signal peptide for classical endoplasmic reticulum–Golgi secretion but is found in serum and is secreted via a nonclassical lysosomal secretion pathway. This study applied bioinformatics and biochemical tools, alongside a protein trafficking mouse models, to characterize the mechanisms of ferritin secretion. Ferritin trafficking via the classical secretion pathway was ruled out, and a 2:1 distribution of intracellular ferritin between membrane-bound compartments and the cytosol was observed, suggesting a role for ferritin in the vesicular compartments of the cell. Focusing on nonclassical secretion, we analyzed mouse models of impaired endolysosomal trafficking and found that ferritin secretion was decreased by a BLOC-1 mutation but increased by BLOC-2, BLOC-3, and Rab27A mutations of the cellular trafficking machinery, suggesting multiple export routes. A 13-amino-acid motif unique to ferritins that lack the secretion signal peptide was identified on the BC-loop of both subunits and plays a role in the regulation of ferritin secretion. Finally, we provide evidence that secretion of iron-rich ferritin was mediated via the multivesicular body–exosome pathway. These results enhance our understanding of the mechanism of ferritin secretion, which is an important piece in the puzzle of tissue iron homeostasis
Preclinical modeling of myelodysplastic syndromes
Myelodysplastic syndromes (MDS) represent a heterogeneous group of hematological clonal disorders. Here, we have tested the bone marrow (BM) cells from 38 MDS patients covering all risk groups in two immunodeficient mouse models: NSG and NSG-S. Our data show comparable level of engraftment in both models. The level of engraftment was patient specific with no correlation to any specific MDS risk group. Furthermore, the co-injection of mesenchymal stromal cells (MSCs) did not improve the level of engraftment. Finally, we have developed an in vitro two-dimensional co-culture system as an alternative tool to in vivo. Using our in vitro system, we have been able to co-culture CD34+cells from MDS patient BM on auto- and/or allogeneic MSCs over 4 weeks with a fold expansion of up to 600 times. More importantly, these expanded cells conserved their MDS clonal architecture as well as genomic integrity
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