Cystic Fibrosis Related Diabetes

Cystic fibrosis related diabetes (CFRD) is a common co-morbidity of cystic fibrosis. It is associated with diminishing lung function, poorer nutritional state, and a worse prognosis and its early diagnosis and treatment is important. In addition, the adverse pulmonary effects of CFRD may be present for up to 10 years prior to diagnosis

Si-metasomatism in serpentinized peridotite: The effects of talc-alteration on strontium and boron isotopes in abyssal serpentinites from Hole 1268a, ODP Leg 209

Ultramafic rocks recovered from Hole 1268a, Ocean Drilling Program Leg 209, to the south of the 15°20′N Fracture Zone on the Mid-Atlantic ridge have experienced a complex history of melt depletion and subsequent interaction with a series of fluids under varying temperature and pH conditions. After intense melt depletion, varying degrees of serpentinization at 100–200 °C took place, initially under seawater-like pH conditions. Subsequently, interaction with a higher temperature (300–350 °C) fluid with low (4–5) pH and low MgO/SiO2 resulted in the heterogeneous alteration of these serpentinites to talc-bearing ultramafic lithologies. The proximity of the currently active, high temperature Logatchev hydrothermal field, located on the opposite flank of the Mid-Atlantic ridge, suggests that unlike more distal localities sampled during ODP Leg 209, Hole 1268a has experienced Si-metasomatism (i.e. talc-alteration) by a Logatchev-like hydrothermal fluid. Serpentinite strontium isotope ratios were not materially shifted by interaction with the subsequent high-T fluid, despite the likelihood that this fluid had locally interacted with mid-ocean ridge gabbro. 87Sr/86Sr in the ultramafic lithologies of Hole 1268a are close to that of seawater (c.0.709) and even acid leached serpentinites retain 87Sr/86Sr in excess of 0.707, indistinguishable from Logatchev hydrothermal fluid. On the other hand, boron isotope ratios appear to have been shifted from seawater-like values in the serpentinites (δ11B = c.+40‰) to much lighter values in talc-altered serpentinites (δ11B = +9 to +20‰). This is likely a consequence of the effects of changing ambient pH and temperature during the mineralogical transition from serpentine to talc. Heterogeneous boron isotope systematics have consequences for the composition of ultramafic portions of the lithosphere returned to the convecting mantle by subduction. Inhomogeneities in δ11B, [B] and mineralogy introduce significant uncertainties in the prediction of the composition of slab fluids released during the early- to mid-stages of subduction

Effect of crustal stress state on magmatic stalling and ascent: case study from Puyehue-Cordón Caulle, Chile

The Southern Volcanic Zone (SVZ) in Chile is an active continental arc with a complex history of volcanism, where a range of magmatic compositions have been erupted in a variety of styles. In the Central SVZ, both monogenetic and polygenetic volcanoes exist, in close proximity to the Liquiñe-Ofqui Fault System (LOFS), but with variable local stress states. Previous studies have inferred varying crustal storage timescales, controlled by the orientation of volcanic centres relative to the N-S striking LOFS and σHMax in this region. To assess the relationship between volcanism and crustal stress states affected by large-scale tectonic structures and edifice controls, we present whole rock geochemical data, to ensure consistency in source dynamics and crustal processing, mineral-specific compositional data, thermobarometry, and Fe–Mg diffusion modelling in olivine crystals from mafic lavas, to assess ascent timescales, from the stratovolcanic edifice of Puyehue-Cordón Caulle and proximal small eruptive centres. Textural observations highlight differences in crystal maturation timescales between centres in inferred compression, transpression, and extension, yet source melting dynamics remain constant. Only samples from the stratovolcanic edifice (in regional compression) preserve extensive zonation in olivine macrocrysts; these textures are generally absent from proximal small eruptive centres in transtension or extension. The zonation in olivines from stratovolcanic lavas yields timescales on the order of a few days to a few weeks, suggesting that even in environments which inhibit ascent, timescales between unrest and eruption of mafic magmas may be short. Significantly, high-resolution compositional profiles from olivine grains in the studied samples record evidence for post-eruptive growth and diffusion, highlighting the importance of careful interpretation of diffusion timescales from zoned minerals in more slowly cooled lavas when compared with tephra samples

The Crystal Hotel: A Microfluidic Approach to Biomimetic Crystallization

A “crystal hotel” microfluidic device that allows crystal growth in confined volumes to be studied in situ is used to produce large calcite single crystals with predefined crystallographic orientation, microstructure, and shape by control of the detailed physical environment, flow, and surface chemistry. This general approach can be extended to form technologically important, nanopatterned single crystals

Advanced Multilevel Node Separator Algorithms

A node separator of a graph is a subset S of the nodes such that removing S and its incident edges divides the graph into two disconnected components of about equal size. In this work, we introduce novel algorithms to find small node separators in large graphs. With focus on solution quality, we introduce novel flow-based local search algorithms which are integrated in a multilevel framework. In addition, we transfer techniques successfully used in the graph partitioning field. This includes the usage of edge ratings tailored to our problem to guide the graph coarsening algorithm as well as highly localized local search and iterated multilevel cycles to improve solution quality even further. Experiments indicate that flow-based local search algorithms on its own in a multilevel framework are already highly competitive in terms of separator quality. Adding additional local search algorithms further improves solution quality. Our strongest configuration almost always outperforms competing systems while on average computing 10% and 62% smaller separators than Metis and Scotch, respectively

Transmission and lineage displacement drive rapid population genomic flux in cystic fibrosis airway infections of a Pseudomonas aeruginosa epidemic strain

Pseudomonas aeruginosa chronic infections of cystic fibrosis (CF) airways are a paradigm for within-host evolution with abundant evidence for rapid evolutionary adaptation and diversification. Recently emerged transmissible strains have spread globally, with the Liverpool Epidemic Strain (LES) the most common strain infecting the UK CF population. Previously we have shown that highly divergent lineages of LES can be found within a single infection, consistent with super-infection among a cross-sectional cohort of patients. However, despite its clinical importance, little is known about the impact of transmission on the genetic structure of these infections over time. To characterize this, we longitudinally sampled a meta-population of 15 genetic lineages within the LES over 13 months among seven chronically infected CF patients by genome sequencing. Comparative genome analyses of P. aeruginosa populations revealed that the presence of coexisting lineages contributed more to genetic diversity within an infection than diversification in situ. We observed rapid and substantial shifts in the relative abundance of lineages and replacement of dominant lineages, likely to represent super-infection by repeated transmissions. Lineage dynamics within patients led to rapid changes in the frequencies of mutations across suites of linked loci carried by each lineage. Many loci were associated with important infection phenotypes such as antibiotic resistance, mucoidy and quorum sensing, and were repeatedly mutated in different lineages. These findings suggest that transmission leads to rapid shifts in the genetic structure of CF infections, including in clinically important phenotypes such as antimicrobial resistance, and is likely to impede accurate diagnosis and treatment

Recent Advances in Graph Partitioning

We survey recent trends in practical algorithms for balanced graph partitioning together with applications and future research directions