Atomic resolution imaging at 2.5 GHz using near-field microwave microscopy

Atomic resolution imaging is demonstrated using a hybrid scanning tunneling/near-field microwave microscope (microwave-STM). The microwave channels of the microscope correspond to the resonant frequency and quality factor of a coaxial microwave resonator, which is built in to the STM scan head and coupled to the probe tip. We find that when the tip-sample distance is within the tunneling regime, we obtain atomic resolution images using the microwave channels of the microwave-STM. We attribute the atomic contrast in the microwave channels to GHz frequency current through the tip-sample tunnel junction. Images of the surfaces of HOPG and Au(111) are presented.Comment: 9 pages, 5 figures, submitted to Applied Physics Letter

Perfect Reflection of Chiral Fermions in Gated Graphene Nanoribbons

We describe the results of a theoretical study of transport through gated metallic graphene nanoribbons using a non-equilibrium Green function method. Although analogies with quantum field theory predict perfect transmission of chiral fermions through gated regions in one dimension, we find \emph{perfect reflection} of chiral fermions in armchair ribbons for specific configurations of the gate. This effect should be measurable in narrow graphene constrictions gated by a charged carbon nanotube.Comment: 9 pages, 3 figures. Submitted to Nano Letter

Unreliable quantitation of species abundance based on high-throughput sequencing data of zooplankton communities

High-throughput sequencing (HTS) is rapidly becoming a popular and robust tool to characterize biodiversity of complex communities, especially for those dominated by microscopic species such as zooplankton. The popular use of HTS-based methods has prompted a possible method of inferring relative species abundance from sequencing data. However, these methods remain largely untested in many communities as to whether sequence data can reliably quantify relative species abundance. Here we tested the relationship between species abundance and sequence abundance in zooplankton using 2 methods: (1) spiking known amounts of indicator species into existing zooplankton communities, and (2) comparing results obtained from parallel replicates for the same natural zooplankton communities. Although we detected a general trend that low-abundance species usually corresponded to low-abundance sequence reads, further statistical analyses revealed that sequencing data could not reliably quantify relative species abundance, even for the same indicator species spiked into different zooplankton communities. The distribution of sequence reads statistically varied even between parallel replicates of the same natural zooplankton communities. Our study reveals that sequence abundance may generally qualitatively reflect species abundance as the general trend between these 2 variables exists; however, extra caution is required when using HTS-based approaches to make quantitative inferences regarding zooplankton communities

Host functions used by hepatitis B virus to complete its life cycle: Implications for developing host-targeting agents to treat chronic hepatitis B

Similar to other mammalian viruses, the life cycle of hepatitis B virus (HBV) is heavily dependent upon and regulated by cellular (host) functions. These cellular functions can be generally placed in to two categories: (a) intrinsic host restriction factors and innate defenses, which must be evaded or repressed by the virus; and (b) gene products that provide functions necessary for the virus to complete its life cycle. Some of these functions may apply to all viruses, but some may be specific to HBV. In certain cases, the virus may depend upon the host function much more than does the host itself. Knowing which host functions regulate the different steps of a virus' life cycle, can lead to new antiviral targets and help in developing novel treatment strategies, in addition to improving a fundamental understanding of viral pathogenesis. Therefore, in this review we will discuss known host factors which influence key steps of HBV life cycle, and further elucidate therapeutic interventions targeting host-HBV interactions

Octet Quark Contents from SU(3) Flavor Symmetry

With the parametrization of parton distribution functions (PDFs) of the proton by Soffer \textit{et al.}, we extend the valence quark contents to other octet baryons by utilizing SU(3) flavor symmetry. We find the method practically useful. Fragmentation functions (FFs) are further obtained through the phenomenological Gribov-Lipatov relation at the $x \to 1$ region. Our results are compared with different models, and these different predictions can be discriminated by upcoming experiments.Comment: 6 pages, 5 figures, final version for journal publicatio

Tomimatsu-Sato geometries, holography and quantum gravity

We analyze the $\delta=2$ Tomimatsu-Sato spacetime in the context of the proposed Kerr/CFT correspondence. This 4-dimensional vacuum spacetime is asymptotically flat and has a well-defined ADM mass and angular momentum, but also involves several exotic features including a naked ring singularity, and two disjoint Killing horizons separated by a region with closed timelike curves and a rod-like conical singularity. We demonstrate that the near horizon geometry belongs to a general class of Ricci-flat metrics with $SL(2,\mathbb{R})\times U(1)$ symmetry that includes both the extremal Kerr and extremal Kerr-bolt geometries. We calculate the central charge and temperature for the CFT dual to this spacetime and confirm the Cardy formula reproduces the Bekenstein-Hawking entropy. We find that all of the basic parameters of the dual CFT are most naturally expressed in terms of charges defined intrinsically on the horizon, which are distinct from the ADM charges in this geometry.Comment: 20+1 pages, 3 figures, changed title, expanded discussion, matches version published in CQ

Dimension of Conformal Blocks in Five Dimensional Kaehler-Chern-Simons Theory

We briefly review the Kaehler-Chern-Simon theory on 5-manifolds which are trivial circle bundles over 4-dimensional Kaehler manifolds and present a detailed calculation of the path integral, using the method of Blau and Thompson.Comment: 17 pages, typos corrected and minor corrections; the version to appear in Journal of Mathematical Physic

Leucine-rich repeat transmembrane proteins instruct discrete dendrite targeting in an olfactory map

Olfactory systems utilize discrete neural pathways to process and integrate odorant information. In Drosophila, axons of first-order olfactory receptor neurons (ORNs) and dendrites of second-order projection neurons (PNs) form class-specific synaptic connections at ~50 glomeruli. The mechanisms underlying PN dendrite targeting to distinct glomeruli in a three-dimensional discrete neural map are unclear. We found that the leucine-rich repeat (LRR) transmembrane protein Capricious (Caps) was differentially expressed in different classes of PNs. Loss-of-function and gain-of-function studies indicated that Caps instructs the segregation of Caps-positive and Caps-negative PN dendrites to discrete glomerular targets. Moreover, Caps-mediated PN dendrite targeting was independent of presynaptic ORNs and did not involve homophilic interactions. The closely related protein Tartan was partially redundant with Caps. These LRR proteins are probably part of a combinatorial cell-surface code that instructs discrete olfactory map formation

Synthesis of Carbon Onion and Its Application as a Porous Carrier for Amorphous Drug Delivery

Given the great potential of porous carrier-based drug delivery for stabilising the amorphous form of drugs and enhancing dissolution profiles, this work is focussed on the synthesis and application of carbon onion or onion-like carbon (OLC) as a porous carrier for oral amorphous drug delivery, using paracetamol (PA) and ibuprofen (IBU) as model drugs. Annealing of nanodiamonds at 1100 °C produced OLC with a diamond core that exhibited low cytotoxicity on Caco-2 cells. Solution adsorption followed by centrifugation was used for drug loading and results indicated that the initial concentration of drug in the loading solution needs to be kept below 11.5% PA and 20.7% IBU to achieve complete amorphous loading. Also, no chemical interactions between the drug and OLC could be detected, indicating the safety of loading into OLC without changing the chemical nature of the drug. Drug release was complete in the presence of sodium dodecyl sulphate (SDS) and was faster compared to the pure crystalline drug, indicating the potential of OLC as an amorphous drug carrier

An Introduction to the Density Matrix Renormalization Group Ansatz in Quantum Chemistry

The Density Matrix Renormalisation Group (DMRG) is an electronic structure method that has recently been applied to ab-initio quantum chemistry. Even at this early stage, it has enabled the solution of many problems that would previously have been intractable with any other method, in particular, multireference problems with very large active spaces. Historically, the DMRG was not originally formulated from a wavefunction perspective, but rather in a Renormalisation Group (RG) language. However, it is now realised that a wavefunction view of the DMRG provides a more convenient, and in some cases more powerful, paradigm. Here we provide an expository introduction to the DMRG ansatz in the context of quantum chemistry.Comment: 17 pages, 3 figure