Succession of the sea-surface microlayer in the coastal Baltic Sea under natural and experimentally induced low-wind conditions

The sea-surface microlayer (SML) is located within the boundary between the atmosphere and hydrosphere. The high spatial and temporal variability of the SML's properties, however, have hindered a clear understanding of interactions between biotic and abiotic parameters at or across the air-water interface. Among the factors changing the physical and chemical environment of the SML, wind speed is an important one. In order to examine the temporal effects of minimized wind influence, SML samples were obtained from the coastal zone of the southern Baltic Sea and from mesocosm experiments in a marina to study naturally and artificially calmed sea surfaces. Organic matter concentrations as well as abundance, (3)H-thymidine incorporation, and the community composition of bacteria in the SML (bacterioneuston) compared to the underlying bulk water (ULW) were analyzed. In all SML samples, dissolved organic carbon and nitrogen were only slightly enriched and showed low temporal variability, whereas particulate organic carbon and nitrogen were generally greatly enriched and highly variable. This was especially pronounced in a dense surface film (slick) that developed during calm weather conditions as well as in the artificially calmed mesocosms. Overall, bacterioneuston abundance and productivity correlated with changing concentrations of particulate organic matter. Moreover, changes in the community composition in the field study were stronger in the particle-attached than in the non-attached bacterioneuston. This implies that decreasing wind enhances the importance of particle-attached assemblages and finally induces a succession of the bacterial community in the SML. Eventually, under very calm meteorological conditions, there is an uncoupling of the bacterioneuston from the ULW

Einsatz von gekeimtem Getreide als Futtermittel

Die EU-Verordnung 1804/1999 regelt die Einbeziehung der tierischen Erzeugung in den Geltungsbereich der Verordnung (EWG) Nr. 2092/91 über den ökologischen Landbau und die entsprechende Kennzeichnung der landwirtschaftlichen Erzeugnisse und Lebensmittel. Danach müssen im ökologischen Landbau alle Tiere nach den Grundregeln dieser Verordnung gehalten werden. Das Futter soll den ernährungsphysiologischen Bedarf der Tiere decken und aus dem ökologischen Anbau stammen. Dafür dürfen bis August 2005 im begrenzten Umfang konventionelle Futtermittel zugesetzt werden, wenn eine ausschließliche Versorgung mit Futtermitteln aus dem ökologischen Anbau nicht möglich ist. Für die Geflügelfütterung bedeutet das einen zulässigen Höchstanteil an konventionellem Futter von 20% im Jahr (max. 25% Trockenmasse am Tag). Bislang werden dafür besonders die konventionellen Komponenten Maiskleber und Kartoffeleiweiß, die als Nebenprodukte bei der Stärkegewinnung anfallen, eingesetzt. Vergleichbare ökologische Produkte sind z. Z. nicht verfügbar. Unter diesem Aspekt ist zu klären, ob eine ausreichende Nährstoff- und Eiweißversorgung über den Einsatz von 20% Getreidekeimlingen in der Futterration gewährleistet werden kann, die damit zu 100% ökologischer Herkunft ist. In einem, im Rahmen des Bundesprogramms ökologischer Landbau, geförderten Projekt werden alle nachfolgend aufgeführten Parameter analysiert. Proteine, Stärken, Nichtstärkepolysaccharide, Zucker und Fette als wertgebende Inhaltsstoffe sowie Auswuchs, Pilzbefall und Mykotoxine als dominierende Schadfaktoren in Getreide stehen dabei im Mittelpunkt des Interesses. Ziel ist es, Kriterien für die optimale Prozessführung der Keimung und eine hohe Produktqualität der Keimlinge zu sichern, um eine hochwertige Futterkomponente aus dem ökologischen Landbau für die Tierernährung bereitzustellen

Sequence-specific long range networks in PSD-95/discs large/ZO-1 (PDZ) domains tune their binding selectivity.

Protein-protein interactions mediated by modular protein domains are critical for cell scaffolding, differentiation, signaling, and ultimately, evolution. Given the vast number of ligands competing for binding to a limited number of domain families, it is often puzzling how specificity can be achieved. Selectivity may be modulated by intradomain allostery, whereby a remote residue is energetically connected to the functional binding site via side chain or backbone interactions. Whereas several energetic pathways, which could mediate intradomain allostery, have been predicted in modular protein domains, there is a paucity of experimental data to validate their existence and roles. Here, we have identified such functional energetic networks in one of the most common protein-protein interaction modules, the PDZ domain. We used double mutant cycles involving site-directed mutagenesis of both the PDZ domain and the peptide ligand, in conjunction with kinetics to capture the fine energetic details of the networks involved in peptide recognition. We performed the analysis on two homologous PDZ-ligand complexes and found that the energetically coupled residues differ for these two complexes. This result demonstrates that amino acid sequence rather than topology dictates the allosteric pathways. Furthermore, our data support a mechanism whereby the whole domain and not only the binding pocket is optimized for a specific ligand. Such cross-talk between binding sites and remote residues may be used to fine tune target selectivity

Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations

Enclosure experiments are frequently used to investigate the impact of changing environmental conditions on microbial assemblages. Yet, how the incuba- tion itself challenges complex bacterial communities is thus far unknown. In this study, metaproteomic profiling, 16S rRNA gene analyses, and cell counts were com- bined to evaluate bacterial communities derived from marine, mesohaline, and oli- gohaline conditions after long-term batch incubations. Early in the experiment, the three bacterial communities were highly diverse and differed significantly in their compositions. Manipulation of the enclosures with terrigenous dissolved organic car- bon resulted in notable differences compared to the control enclosures at this early phase of the experiment. However, after 55 days, bacterial communities in the ma- nipulated and the control enclosures under marine and mesohaline conditions were all dominated by gammaproteobacterium Spongiibacter. In the oligohaline enclo- sures, actinobacterial cluster I of the hgc group (hgc-I) remained abundant in the late phase of the incubation. Metaproteome analyses suggested that the ability to use outer membrane-based internal energy stores, in addition to the previously de- scribed grazing resistance, may enable the gammaproteobacterium Spongiibacter to prevail in long-time incubations. Under oligohaline conditions, the utilization of ex- ternal recalcitrant carbon appeared to be more important (hgc-I). Enclosure experi- ments with complex natural microbial communities are important tools to investi- gate the effects of manipulations. However, species-specific properties, such as individual carbon storage strategies, can cause manipulation-independent effects and need to be considered when interpreting results from enclosures.This study was financially supported by the SAW-funded ATKiM project, which provided funds to D. P. R. Herlemann, C. Meeske, K. Jürgens, S. Markert, and T. Schweder. D. P. R. Herlemann was also supported by the European Regional Develop- ment Fund/Estonian Research Council funded Mobilitas Plus Top Researcher grant MOBTT24. We thank the crew and captain of the RV Meteor (M86, M87) for support during the research cruise. The computations were performed on resources provided by the Swedish National Infrastructure for Computing (SNIC) at the PDC Centre for High Performance Computing (PDC-HPC) and Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX). We thank Jana Matulla for excellent technical assis- tance and Stephan Fuchs for his help and advice in MS database construction. We also thank Stefan E. Heiden for valuable help with the CDD BLAST analyses.This study was financially supported by the SAW-funded ATKiM project, which provided funds to D. P. R. Herlemann, C. Meeske, K. Jürgens, S. Markert, and T. Schweder. D. P. R. Herlemann was also supported by the European Regional Develop- ment Fund/Estonian Research Council funded Mobilitas Plus Top Researcher grant MOBTT24. We thank the crew and captain of the RV Meteor (M86, M87) for support during the research cruise. The computations were performed on resources provided by the Swedish National Infrastructure for Computing (SNIC) at the PDC Centre for High Performance Computing (PDC-HPC) and Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX). We thank Jana Matulla for excellent technical assis- tance and Stephan Fuchs for his help and advice in MS database construction. We also thank Stefan E. Heiden for valuable help with the CDD BLAST analyses