Test d’une hypothèse d’investissement à écarts multiples

According to the multiple-gap hypothesis, investment decisions, determined by the joint action of multiple determinants, result from the dominance at the time of the decision of the most constraining of these factors. This hypothesis is tested on Dutch investment data for the period 1951-1974 by means of three types of models: a "rigid" model in which a single regime is selected at any time, and two "flexible" models allowing for a joint action of the various determinants, the last model incorporating a switching mechanism with respect to the dominant factor. Estimation problems are discussed and the results obtained with the different models are compared

search.bioPreprint: A discovery tool for cutting edge, preprint biomedical research articles

The time it takes for a completed manuscript to be published traditionally can be extremely lengthy. Article publication delay, which occurs in part due to constraints associated with peer review, can prevent the timely dissemination of critical and actionable data associated with new information on rare diseases or developing health concerns such as Zika virus. Preprint servers are open access online repositories housing preprint research articles that enable authors (1) to make their research immediately and freely available and (2) to receive commentary and peer review prior to journal submission. There is a growing movement of preprint advocates aiming to change the current journal publication and peer review system, proposing that preprints catalyze biomedical discovery, support career advancement, and improve scientific communication. While the number of articles submitted to and hosted by preprint servers are gradually increasing, there has been no simple way to identify biomedical research published in a preprint format, as they are not typically indexed and are only discoverable by directly searching the specific preprint server websites. To address this issue, we created a search engine that quickly compiles preprints from disparate host repositories and provides a one-stop search solution. Additionally, we developed a web application that bolsters the discovery of preprints by enabling each and every word or phrase appearing on any web site to be integrated with articles from preprint servers. This tool, search.bioPreprint, is publicly available at http://www.hsls.pitt.edu/resources/preprint

Hydrological response of a small catchment burned by experimental fire

Fire can considerably change hydrological processes, increasing the risk of extreme flooding and erosion events. Although hydrological processes are largely affected by scale, catchment-scale studies on the hydrological impact of fire in Europe are scarce, and nested approaches are rarely used. We performed a catchment-scale experimental fire to improve insight into the drivers of fire impact on hydrology. In north-central Portugal, rainfall, canopy interception, streamflow and soil moisture were monitored in small shrub-covered paired catchments pre- and post-fire. The shrub cover was medium dense to dense (44 to 84 %) and pre-fire canopy interception was on average 48.7% of total rainfall. Fire increased streamflow volumes 1.6 times more than predicted, resulting in increased runoff coefficients and changed rainfall-streamflow relationships - although the increase in streamflow per unit rainfall was only significant at the subcatchment-scale. Fire also fastened the response of topsoil moisture to rainfall from 2.7 to 2.1 h (p = 0.058), and caused more rapid drying of topsoils after rain events. Since soil physical changes due to fire were not apparent, we suggest that changes resulting from vegetation removal played an important role in increasing streamflow after fire. Results stress that fire impact on hydrology is largely affected by scale, highlight the hydrological impact of fire on small scales, and emphasize the risk of overestimating fire impact when upscaling plot-scale studies to the catchment-scale. Finally, they increase understanding of the processes contributing to post-fire flooding and erosion events

Comparative analysis of glutaredoxin domains from bacterial opportunistic pathogens

NMR structures of the glutaredoxin (GLXR) domains from Br. melitensis and Ba. henselae have been determined as part of the SSGCID initiative. Comparison of the domains with known structures reveals overall structural similarity between these proteins and previously determined E. coli GLXR structures, with minor changes associated with the position of helix 1 and with regions that diverge from similar structures found in the closest related human homolog

Molecular Evolution of Ultraspiracle Protein (USP/RXR) in Insects

Ultraspiracle protein/retinoid X receptor (USP/RXR) is a nuclear receptor and transcription factor which is an essential component of a heterodimeric receptor complex with the ecdysone receptor (EcR). In insects this complex binds ecdysteroids and plays an important role in the regulation of growth, development, metamorphosis and reproduction. In some holometabolous insects, including Lepidoptera and Diptera, USP/RXR is thought to have experienced several important shifts in function. These include the acquisition of novel ligand-binding properties and an expanded dimerization interface with EcR. In light of these recent hypotheses, we implemented codon-based likelihood methods to investigate if the proposed shifts in function are reflected in changes in site-specific evolutionary rates across functional and structural motifs in insect USP/RXR sequences, and if there is any evidence for positive selection at functionally important sites. Our results reveal evidence of positive selection acting on sites within the loop connecting helices H1 and H3, the ligand-binding pocket, and the dimer interface in the holometabolous lineage leading to the Lepidoptera/Diptera/Trichoptera. Similar analyses conducted using EcR sequences did not indicate positive selection. However, analyses allowing for variation across sites demonstrated elevated non-synonymous/synonymous rate ratios (dN/dS), suggesting relaxed constraint, within the dimerization interface of both USP/RXR and EcR as well as within the coactivator binding groove and helix H12 of USP/RXR. Since the above methods are based on the assumption that dS is constant among sites, we also used more recent models which relax this assumption and obtained results consistent with traditional random-sites models. Overall our findings support the evolution of novel function in USP/RXR of more derived holometabolous insects, and are consistent with shifts in structure and function which may have increased USP/RXR reliance on EcR for cofactor recruitment. Moreover, these findings raise important questions regarding hypotheses which suggest the independent activation of USP/RXR by its own ligand