Effective Population Size, Genetic Variation, and Their Relevance for Conservation: The Bighorn Sheep in Tiburon Island and Comparisons with Managed Artiodactyls

<div><p>The amount of genetic diversity in a finite biological population mostly depends on the interactions among evolutionary forces and the effective population size (<i>N</i>_<i>e</i>) as well as the time since population establishment. Because the <i>N</i>_<i>e</i> estimation helps to explore population demographic history, and allows one to predict the behavior of genetic diversity through time, <i>N</i>_<i>e</i> is a key parameter for the genetic management of small and isolated populations. Here, we explored an <i>N</i>_<i>e</i>-based approach using a bighorn sheep population on Tiburon Island, Mexico (TI) as a model. We estimated the current (<i>N</i>_<i>crnt</i>) and ancestral stable (<i>N</i>_<i>stbl</i>) inbreeding effective population sizes as well as summary statistics to assess genetic diversity and the demographic scenarios that could explain such diversity. Then, we evaluated the feasibility of using TI as a source population for reintroduction programs. We also included data from other bighorn sheep and artiodactyl populations in the analysis to compare their inbreeding effective size estimates. The TI population showed high levels of genetic diversity with respect to other managed populations. However, our analysis suggested that TI has been under a genetic bottleneck, indicating that using individuals from this population as the only source for reintroduction could lead to a severe genetic diversity reduction. Analyses of the published data did not show a strict correlation between <i>H</i>_<i>E</i> and <i>N</i>_<i>crnt</i> estimates. Moreover, we detected that ancient anthropogenic and climatic pressures affected all studied populations. We conclude that the estimation of <i>N</i>_<i>crnt</i> and <i>N</i>_<i>stbl</i> are informative genetic diversity estimators and should be used in addition to summary statistics for conservation and population management planning.</p> </div

Map showing the localization of Tiburon Island on the Gulf of California, Mexico.

<p>Map showing the localization of Tiburon Island on the Gulf of California, Mexico.</p

Estimates for the ancestral stable (N_stlb) and current (N_crnt) inbreeding effective sizes.

<p>Dots correspond to the modal value of parameter distributions obtained with MSVAR 1.3. Error bars represent the first and third quartiles.</p

Novel Circoviruses Detected in Feces of Sonoran Felids

Sonoran felids are threatened by drought and habitat fragmentation. Vector range expansion and anthropogenic factors such as habitat encroachment and climate change are altering viral evolutionary dynamics and exposure. However, little is known about the diversity of viruses present in these populations. Small felid populations with lower genetic diversity are likely to be most threatened with extinction by emerging diseases, as with other selective pressures, due to having less adaptive potential. We used a metagenomic approach to identify novel circoviruses, which may have a negative impact on the population viability, from confirmed bobcat (Lynx rufus) and puma (Puma concolor) scats collected in Sonora, Mexico. Given some circoviruses are known to cause disease in their hosts, such as porcine and avian circoviruses, we took a non-invasive approach using scat to identify circoviruses in free-roaming bobcats and puma. Three circovirus genomes were determined, and, based on the current species demarcation, they represent two novel species. Phylogenetic analyses reveal that one circovirus species is more closely related to rodent associated circoviruses and the other to bat associated circoviruses, sharing highest genome-wide pairwise identity of approximately 70% and 63%, respectively. At this time, it is unknown whether these scat-derived circoviruses infect felids, their prey, or another organism that might have had contact with the scat in the environment. Further studies should be conducted to elucidate the host of these viruses and assess health impacts in felids.Open access journalThis item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at [email protected]

Data from: Jaguar Movement Database: a GPS-based movement dataset of an apex predator in the Neotropics

The field of movement ecology has rapidly grown during the last decade, with important advancements in tracking devices and analytical tools that have provided unprecedented insights into where, when, and why species move across a landscape. Although there has been an increasing emphasis on making animal movement data publicly available, there has also been a conspicuous dearth in the availability of such data on large carnivores. Globally, large predators are of conservation concern. However, due to their secretive behavior and low densities, obtaining movement data on apex predators is expensive and logistically challenging. Consequently, the relatively small sample sizes typical of large carnivore movement studies may limit insights into the ecology and behavior of these elusive predators. The aim of this initiative is to make available to the conservation-scientific community a dataset of 134,690 locations of jaguars (Panthera onca) collected from 117 individuals (54 males and 63 females) tracked by GPS technology. Individual jaguars were monitored in five different range countries representing a large portion of the species’ distribution. This dataset may be used to answer a variety of ecological questions including but not limited to: improved models of connectivity from local to continental scales; the use of natural or human-modified landscapes by jaguars; movement behavior of jaguars in regions not represented in this dataset; intraspecific interactions; and predator-prey interactions. In making our dataset publicly available, we hope to motivate other research groups to do the same in the near future. Specifically, we aim to help inform a better understanding of jaguar movement ecology with applications towards effective decision making and maximizing long-term conservation efforts for this ecologically important species

DataS1

The archive has 2 files. The first file has general information about captured animals (estimated age, weight, collar used, etc.). The second file has general information on animals' location