Additional file 3: Figure S2. of Tracking crop varieties using genotyping-by-sequencing markers: a case study using cassava (Manihot esculenta Crantz)

Strong geographical structure associated with the most common names attributed to Variety I. (PDF 114 kb

Additional file 1: Table S1. of Tracking crop varieties using genotyping-by-sequencing markers: a case study using cassava (Manihot esculenta Crantz)

Sample information associated with the 917 accessions from three regions of Ghana and the library of known varieties from CSIR-CRI. ADMIXTURE-based ancestry estimates according to predefined eleven clusters are also provided. We have also attempted to, as far as the library is concerned, classify each of the farmers’ accessions to their matching released varieties in the CSIR-CRI library. (XLSX 151 kb

Additional file 4: Table S2. of Tracking crop varieties using genotyping-by-sequencing markers: a case study using cassava (Manihot esculenta Crantz)

An overview of the distribution of accessions present in the ADMIXTURE clusters and the groups identified by the DAPC. (DOCX 83 kb

学生による授業評価の意義と課題(第7回月例研究会記録)

この論文は国立情報学研究所の学術雑誌公開支援事業により電子化されました

Additional file 3: Supplemental dataset S1. of Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

List of the 26,198 protein coding genes predicted in the D. rotundata genome. (XLSX 1480 kb

Additional file 2: Figures S1–S22. of Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

Supplementary figures including a summary of world yam production and photos of yam markets in West Africa (Figure S1), summary of BAC-end sequencing used for genome scaffolding (Figure S2), summary of k-mer analysis of Guinea yam genome (Figure S3), flowchart of Guinea yam genome assembly (Figure S4), summary of Guinea yam mitochondrial genome (Figure S5), flowchart of RAD-seq for linkage analysis (Figure S6), summary of RAD-seq analysis (Figure S7), summary of RAD-seq DNA markers used for linkage mapping and anchoring of scaffolds (Figure S8), procedure of linkage analysis and split of scaffolds depending on recombination fraction between RAD markers (Figure S9), RAD-seq-based linkage maps of D. rotundata generated by pseudo-testcross method (Figure S10), a matrix showing scaffolds shared between two linkage groups generated for two parents (Figure S11), schematic diagram for developing physical map of D. rotundata (Figure S12), frequency of distances of BAC-end sequences in the genome (Figure S13), scheme showing pipeline of genome annotation of D. rotundata (Figure S14), self-self syntenic dot plot of D. rotundata pseudo-chromosomes (Figure S15), SyMAP dot plot analysis of whole genome synteny between three monocot species (Figure S16), explanation of QTL-seq analysis to identify sex-linked genome regions in D. rotundata (Figure S17), QTL-seq results (Figure S18), sp1 DNA marker genotypes of F1 progeny and their association with sex (Figure S19), explanation of method for identification of putative W-region of D. rotundata genome (Figure S20), identification of female- and male-specific genomic regions (Figure S21), method of calculation of confidence interval of QTL-seq analysis (Figure S22). (PPTX 15700 kb