37 research outputs found

    cis-acting elements required for RNA polymerase II and III transcription in the human U2 and U6 snRNA promoters.

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    Although the human U2 and U6 snRNA genes are transcribed by RNA polymerases II and III respectively, their promoters are remarkably similar in structure. Both promoters contain a proximal element and an enhancer region with an octamer motif. The U6 promoter contains in addition an A/T rich region that defines it as an RNA polymerase III promoter. We have examined in further detail the contributions of sequences in the human U2 and U6 promoter regions to transcription by RNA polymerase II and III. We find that although the sequences surrounding the U2 cap site favor RNA polymerase II transcription, their presence cannot suppress a shift to RNA polymerase III specificity upon insertion of the U6 A/T box. In the U6 promoter, the 3' part of the proximal element homology is essential for efficient transcription and is also involved in localizing the start site of transcription. A region downstream of the proximal element homology is required for RNA polymerase II (but not for RNA polymerase III) transcription, both in the U2 promoter and in the U6 promoter. This element may be recognized by an RNA polymerase II transcription factor or by RNA polymerase II itself. The presence of this element in the U6 promoter raises the possibility that the human U6 gene is, under certain circumstances, transcribed by RNA polymerase II

    A Step towards Merging xUML and CSP||B

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    Much research work has been done on linking UML, and formal methods but few have focused on using formal methods to check the integrity of the UML models so that the models can be verified. In this paper we focus on executable UML and on the issues related to concurrent state machines. We show that one integrated formal methods approach, CSP parallel to B, has the potential to be tailored to support reasoning about concurrent state machines and in turn expose any weaknesses in the UML model. We identify future avenues of research so that a system methodology based on executable UML can be enhanced by formal reasoning

    A step towards merging xUML and CSP ∥ B

    No full text
    Much research work has been done on linking UML and formal methods but few have focused on using formal methods to check the integrity of the UML models so that the models can be verified. In this paper we focus on executable UML and on the issues related to concurrent state machines. We show that one integrated formal methods approach, CSP || B, has the potential to be tailored to support reasoning about concurrent state machines and in turn expose any weaknesses in the UML model. We identify future avenues of research so that a system methodology based on executable UML can be enhanced by formal reasoning
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