Amphibian, Reptile, and Small Mammal Associates of Ozark Pocket Gopher Habitat in Izard County, Arkansas

We conducted a study of the amphibian, reptile, and small mammal community assemblage of Ozark pocket gopher (Geomys bursarius ozarkensis) habitat in north-central Arkansas. We used 2 methods to capture individuals: hand capture and drift fences. During the study, we captured and marked a total of 9 anuran, 4 salamander, 5 lizard, 3 turtle, 16 snake, and 8 small mammal species exclusive of pocket gophers. We found one hatchling three-toed box turtle (Terrapene carolina triunguis) and one rough earth snake (Virginia striatula) inside a pocket gopher burrow and mound, respectively. Additionally, we witnessed both eastern racers (Coluber constrictor) and eastern coachwhips (Masticophis flagellum) retreat into pocket gopher burrows, as well as Hurter’s spadefoots (Scaphiopus holbrookii hurterii) burrow into pocket gopher mounds when released. Our results highlight the importance of mammalian burrows, specifically pocket gophers, to other vertebrate associates in grassland ecosystems. Both conservationists and managers need to determine the pocket gopher’s impact on ecosystem health and viability, specifically in natural grasslands, before conservation and/or management strategies are employed

Microclimatic changes and the indirect loss of ant diversity in a tropical agroecosystem

Recent changes in the coffee agroecosystem of Costa Rica were used to study the mechanism of biodiversity loss in transforming agroecosystems, focusing on the ground-foraging ant community. Coffee farms are being transformed from vegetationally diverse shaded agroforestry systems to unshaded coffee monocultures. We tested the hypothesis that the high-light environment and lack of leaf litter cover in the unshaded system are the determinants of the differences in ground-foraging ant diversity. Four treatments were established within the light gaps of a shaded plantation: shade, leaf litter, shade plus leaf litter, and a control (no shade or leaf litter added). Ants were sampled using tuna fish baits and light and temperature were measured. Shade and leaf litter had a significant effect on the ant fauna but probably for indirect reasons having to do with species interactions. In both shade treatments, Solenopsis geminata , the tropical fire ant, decreased significantly while the other species increased. The possibility that the physical factor changes the nature of competitive interactions between the most abundant species is discussed.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47696/1/442_2004_Article_BF00333736.pd

Foraging behavior as a determinant of asymmetric competitive interaction between two ant species in a tropical agroecosystem

This work is concerned with elucidating competitive interactions between two neotropical ants, Solenopsis geminata and Pheidole radoszkowskii , focusing on their foraging behavior. When released from competition from P. radoszkowskii, S. geminata increased its foraging activity. On the other hand, when released from competition from S. geminata, P. radoszkowskii did not respond, demonstrating asymmetric competition between the two species. Foraging experiments showed that P. radoszkowskii is more efficient at finding food resources, whereas S. geminata is better at defending the resources once they are encountered. These differences in foraging behavior appear to permit the coexistence of these two species. The practical implications of the results for the management of ant communities in tropical agroecosystems is discussed with respect to the potential use of ants as natural enemies.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47804/1/442_2004_Article_BF00341471.pd

Angiogenic mRNA and microRNA Gene Expression Signature Predicts a Novel Subtype of Serous Ovarian Cancer

Ovarian cancer is the fifth leading cause of cancer death for women in the U.S. and the seventh most fatal worldwide. Although ovarian cancer is notable for its initial sensitivity to platinum-based therapies, the vast majority of patients eventually develop recurrent cancer and succumb to increasingly platinum-resistant disease. Modern, targeted cancer drugs intervene in cell signaling, and identifying key disease mechanisms and pathways would greatly advance our treatment abilities. In order to shed light on the molecular diversity of ovarian cancer, we performed comprehensive transcriptional profiling on 129 advanced stage, high grade serous ovarian cancers. We implemented a, re-sampling based version of the ISIS class discovery algorithm (rISIS: robust ISIS) and applied it to the entire set of ovarian cancer transcriptional profiles. rISIS identified a previously undescribed patient stratification, further supported by micro-RNA expression profiles, and gene set enrichment analysis found strong biological support for the stratification by extracellular matrix, cell adhesion, and angiogenesis genes. The corresponding “angiogenesis signature” was validated in ten published independent ovarian cancer gene expression datasets and is significantly associated with overall survival. The subtypes we have defined are of potential translational interest as they may be relevant for identifying patients who may benefit from the addition of anti-angiogenic therapies that are now being tested in clinical trials

A population-based cohort study of HRT use and breast cancer in southern Sweden

The overall tumour incidence and breast cancer incidence related to hormone replacement therapy (HRT) were followed in a population-based cohort of 29 508 women, aged 25–65 when interviewed in 1990–92. By the end of the follow up in December 1999, there were 226 611 person-years of observation. A total of 1145 malignant tumours were recorded (expected 1166.6; SIR = 0.98, 95% CI 0.93–1.04). There was a small excess of breast cancer with 434 observed and 387.69 expected (SIR = 1.12, 95% CI 1.02–1.23). Among about 3 663 ever users of HRT, there was no increase in overall tumour incidence (SIR = 0.98, 95% CI 0.86–1.12) but a significant excess of breast cancer (SIR = 1.35, 95% CI 1.09–1.64) compared with never users (SIR = 1.07, 95% CI 0.96–1.19). Breast cancer increased with increasing duration of use and for 48–120 months use the SIR was 1.92 (95% CI 1.32–2.70). There was no significant interaction with family history of breast cancer although an independent additive effect was suggested between HRT use and family history. In a Cox regression model time to breast cancer in relation to duration of HRT use was analysed adjusting for age at menarche, age at menopause, age at first full term pregnancy, parity and age at diagnosis. A significantly higher risk was seen for longer duration of HRT use compared with never users. No increased risk is seen in women beyond 5 years after stopping HRT. There was no interaction between previous use of oral contraceptives and later HRT use. © 2001 Cancer Research Campaign http://www.bjcancer.co

Ovarian cancer histology-specific incidence trends in Canada 1969–1993: age-period-cohort analyses

This study examined histology-specific incidence trends of ovarian cancer in Canada, 1969–1993. The impact of age, period and cohort effects on these trends were studied by means of age-period-cohort analysis. Age-standardized incidence rates of serous, endometrioid, clear cell and germ cell tumours increased significantly and the rates of sex cord-stromal and other classified epithelial ovarian tumours decreased considerably. The rates of mucinous and NOS/unclassified tumours remained unchanged. Cohort effect has a major impact on incidence trends of serous, endometrioid, germ cell, sex cord-stromal and other classified epithelial ovarian tumours but no meaningful impact on trends of mucinous, clear cell, or NOS/unclassified ovarian tumours. Various cohort patterns by histology subtypes were observed: the risk of developing serious tumours increased markedly among birth cohorts of 1895–1930, stabilized thereafter and decreased among young cohorts of 1950–1960; the risk of germ cell tumours increased significantly among young cohorts of 1965–1980; and the risk of sex cord-stromal tumours dropped constantly among cohorts 1910–1950. Various period patterns by histology subtypes observed in this study suggested changes in histology classification criteria over the period. Further studies need to consider the various etiologies and the classification criteria changes according to histology subtypes. © 1999 Cancer Research Campaig

Massive migration from the steppe is a source for Indo-European languages in Europe

We generated genome-wide data from 69 Europeans who lived between 8,000-3,000 years ago by enriching ancient DNA libraries for a target set of almost four hundred thousand polymorphisms. Enrichment of these positions decreases the sequencing required for genome-wide ancient DNA analysis by a median of around 250-fold, allowing us to study an order of magnitude more individuals than previous studies and to obtain new insights about the past. We show that the populations of western and far eastern Europe followed opposite trajectories between 8,000-5,000 years ago. At the beginning of the Neolithic period in Europe, ~8,000-7,000 years ago, closely related groups of early farmers appeared in Germany, Hungary, and Spain, different from indigenous hunter-gatherers, whereas Russia was inhabited by a distinctive population of hunter-gatherers with high affinity to a ~24,000 year old Siberian6 . By ~6,000-5,000 years ago, a resurgence of hunter-gatherer ancestry had occurred throughout much of Europe, but in Russia, the Yamnaya steppe herders of this time were descended not only from the preceding eastern European hunter-gatherers, but from a population of Near Eastern ancestry. Western and Eastern Europe came into contact ~4,500 years ago, as the Late Neolithic Corded Ware people from Germany traced ~3/4 of their ancestry to the Yamnaya, documenting a massive migration into the heartland of Europe from its eastern periphery. This steppe ancestry persisted in all sampled central Europeans until at least ~3,000 years ago, and is ubiquitous in present-day Europeans. These results provide support for the theory of a steppe origin of at least some of the Indo-European languages of Europe