139 research outputs found

    Use of silenced plants in allelopathy bioassays: a novel approach

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    Learning from eXtreme Bandit Feedback

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    We study the problem of batch learning from bandit feedback in the setting of extremely large action spaces. Learning from extreme bandit feedback is ubiquitous in recommendation systems, in which billions of decisions are made over sets consisting of millions of choices in a single day, yielding massive observational data. In these large-scale real-world applications, supervised learning frameworks such as eXtreme Multi-label Classification (XMC) are widely used despite the fact that they incur significant biases due to the mismatch between bandit feedback and supervised labels. Such biases can be mitigated by importance sampling techniques, but these techniques suffer from impractical variance when dealing with a large number of actions. In this paper, we introduce a selective importance sampling estimator (sIS) that operates in a significantly more favorable bias-variance regime. The sIS estimator is obtained by performing importance sampling on the conditional expectation of the reward with respect to a small subset of actions for each instance (a form of Rao-Blackwellization). We employ this estimator in a novel algorithmic procedure -- named Policy Optimization for eXtreme Models (POXM) -- for learning from bandit feedback on XMC tasks. In POXM, the selected actions for the sIS estimator are the top-p actions of the logging policy, where p is adjusted from the data and is significantly smaller than the size of the action space. We use a supervised-to-bandit conversion on three XMC datasets to benchmark our POXM method against three competing methods: BanditNet, a previously applied partial matching pruning strategy, and a supervised learning baseline. Whereas BanditNet sometimes improves marginally over the logging policy, our experiments show that POXM systematically and significantly improves over all baselines

    Taking Ecological Function Seriously: Soil Microbial Communities Can Obviate Allelopathic Effects of Released Metabolites

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    Allelopathy (negative, plant-plant chemical interactions) has been largely studied as an autecological process, often assuming simplistic associations between pairs of isolated species. The growth inhibition of a species in filter paper bioassay enriched with a single chemical is commonly interpreted as evidence of an allelopathic interaction, but for some of these putative examples of allelopathy, the results have not been verifiable in more natural settings with plants growing in soil.On the basis of filter paper bioassay, a recent study established allelopathic effects of m-tyrosine, a component of root exudates of Festuca rubra ssp. commutata. We re-examined the allelopathic effects of m-tyrosine to understand its dynamics in soil environment. Allelopathic potential of m-tyrosine with filter paper and soil (non-sterile or sterile) bioassays was studied using Lactuca sativa, Phalaris minor and Bambusa arundinacea as assay species. Experimental application of m-tyrosine to non-sterile and sterile soil revealed the impact of soil microbial communities in determining the soil concentration of m-tyrosine and growth responses.Here, we show that the allelopathic effects of m-tyrosine, which could be seen in sterilized soil with particular plant species were significantly diminished when non-sterile soil was used, which points to an important role for rhizosphere-specific and bulk soil microbial activity in determining the outcome of this allelopathic interaction. Our data show that the amounts of m-tyrosine required for root growth inhibition were higher than what would normally be found in F. rubra ssp. commutata rhizosphere. We hope that our study will motivate researchers to integrate the role of soil microbial communities in bioassays in allelopathic research so that its importance in plant-plant competitive interactions can be thoroughly evaluated

    Genetics of bushy growth habit and its implications in chickpea improvement

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    Chickpea (Cicer arietinum L.) plant is generally erect, semi-erect, spreading, semi-prostrate or prostrate (mainly wild annual Cicer species) in growth habit depending on the angle of branches arises from the vertical axis. Spontaneous mutations are the source of genetic variability and have resulted into dwarf erect compact type plants with high number of branches arising from base, commonly called as “bushy mutants” in chickpea [1-3]. In a study [4], it was reported that mean yield of the lines with bushy growth habit, across all environments, was higher than that of the erect habit lines..

    Inhibitory effects of Eucalyptus globulus on understorey plant growth and species richness are greater in non-native regions

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    Aim: We studied the novel weapons hypothesis in the context of the broadly distributed tree species Eucalyptus globulus. We evaluated the hypothesis that this Australian species would produce stronger inhibitory effects on species from its non-native range than on species from its native range. Location: We worked in four countries where this species is exotic (U.S.A., Chile, India, Portugal) and one country where it is native (Australia). Time period: 2009–2012. Major taxa studied: Plants. Methods: We compared species composition, richness and height of plant communities in 20 paired plots underneath E. globulus individuals and open areas in two sites within its native range and each non-native region. We also compared effects of litter leachates of E. globulus on root growth of seedlings in species from Australia, Chile, the U.S.A. and India. Results: In all sites and countries, the plant community under E. globulus canopies had lower species richness than did the plant community in open areas. However, the reduction was much greater in the non-native ranges: species richness declined by an average of 51% in the eight non-native sites versus 8% in the two native Australian sites. The root growth of 15 out of 21 species from the non-native range were highly suppressed by E. globulus litter leachates, whereas the effect of litter leachate varied from facilitation to suppression for six species native to Australia. The mean reduction in root growth for Australian plants was significantly lower than for plants from the U.S.A., Chile and India. Main conclusions: Our results show biogeographical differences in the impact of an exotic species on understorey plant communities. Consistent with the novel weapons hypothesis, our findings suggest that different adaptations of species from the native and non-native ranges to biochemical compounds produced by an exotic species may play a role in these biogeographical differences.NSF EPSCoR Track-1, Grant/Award Number: EPS-1101342; Australian Research Council, Grant/Award Number: DE12010222

    Ecological phytochemistry of Cerrado (Brazilian savanna) plants

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    The Cerrado (the Brazilian savanna) is one of the vegetation formations of great biodiversity in Brazil and it has experienced strong deforestation and fragmentation. The Cerrado must contain at least 12,000 higher plant species.We discuss the ecological relevance of phytochemical studies carried out on plants from the Cerrado, including examples of phytotoxicity, antifungal, insecticidal and antibacterial activities. The results have been classified according to activity and plant family. The most active compounds have been highlighted and other activities are discussed. A large number of complex biochemical interactions occur in this system. However, only a small fraction of the species has been studied from the phytochemical viewpoint to identify the metabolites responsible for these interactions
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