Optimization of sample preparation and green color imaging using the mNeonGreen fluorescent protein in bacterial cells for photoactivated localization microscopy.

mNeonGreen fluorescent protein is capable of photo-switching, hence in principle applicable for super-resolution imaging. However, difficult-to-control blinking kinetics that lead to simultaneous emission of multiple nearby mNeonGreen molecules impedes its use for PALM. Here, we determined the on- and off- switching rate and the influence of illumination power on the simultaneous emission. Increasing illumination power reduces the probability of simultaneous emission, but not enough to generate high quality PALM images. Therefore, we introduce a simple data post-processing step that uses temporal and spatial information of molecule localizations to further reduce artifacts arising from simultaneous emission of nearby emitters. We also systematically evaluated various sample preparation steps to establish an optimized protocol to preserve cellular morphology and fluorescence signal. In summary, we propose a workflow for super-resolution imaging with mNeonGreen based on optimization of sample preparation, data acquisition and simple post-acquisition data processing. Application of our protocol enabled us to resolve the expected double band of bacterial cell division protein DivIVA, and to visualize that the chromosome organization protein ParB organized into sub-clusters instead of the typically observed diffraction-limited foci. We expect that our workflow allows a broad use of mNeonGreen for super-resolution microscopy, which is so far difficult to achieve

Dynamics of positive- and negative-mass solitons in optical lattices and inverted traps

We study the dynamics of one-dimensional solitons in the attractive and repulsive Bose-Einstein condensates (BECs) loaded into an optical lattice (OL), which is combined with an external parabolic potential. First, we demonstrate analytically that, in the repulsive BEC, where the soliton is of the gap type, its effective mass is \emph{negative}. This gives rise to a prediction for the experiment: such a soliton cannot be not held by the usual parabolic trap, but it can be captured (performing harmonic oscillations) by an anti-trapping inverted parabolic potential. We also study the motion of the soliton a in long system, concluding that, in the cases of both the positive and negative mass, it moves freely, provided that its amplitude is below a certain critical value; above it, the soliton's velocity decreases due to the interaction with the OL. At a late stage, the damped motion becomes chaotic. We also investigate the evolution of a two-soliton pulse in the attractive model. The pulse generates a persistent breather, if its amplitude is not too large; otherwise, fusion into a single fundamental soliton takes place. Collisions between two solitons captured in the parabolic trap or anti-trap are considered too. Depending on their amplitudes and phase difference, the solitons either perform stable oscillations, colliding indefinitely many times, or merge into a single soliton. Effects reported in this work for BECs can also be formulated for optical solitons in nonlinear photonic crystals. In particular, the capture of the negative-mass soliton in the anti-trap implies that a bright optical soliton in a self-defocusing medium with a periodic structure of the refractive index may be stable in an anti-waveguide.Comment: 22pages, 9 figures, submitted to Journal of Physics

Viable tax constitutions

Taxation is only sustainable if the general public complies with it. This observation is uncontroversial with tax practitioners but has been ignored by the public finance tradition, which has interpreted tax constitutions as binding contracts by which the power to tax is irretrievably conferred by individuals to government, which can then levy any tax it chooses. However, in the absence of an outside party enforcing contracts between members of a group, no arrangement within groups can be considered to be a binding contract, and therefore the power of tax must be sanctioned by individuals on an ongoing basis. In this paper we offer, for the first time, a theoretical analysis of this fundamental compliance problem associated with taxation, obtaining predictions that in some cases point to a re-interptretation of the theoretical constructions of the public finance tradition while in others call them into question

Energy funneling in a bent chain of Morse oscillators with long-range coupling

A bent chain of coupled Morse oscillators with long-range dispersive interaction is considered. Moving localized excitations may be trapped in the bending region. Thus chain geometry acts like an impurity. An energy funneling effect is observed in the case of random initial conditions.Comment: 6 pages, 12 figures. Submitted to Physical Review E, Oct. 13, 200

Time evolution of models described by one-dimensional discrete nonlinear Schr\"odinger equation

The dynamics of models described by a one-dimensional discrete nonlinear Schr\"odinger equation is studied. The nonlinearity in these models appears due to the coupling of the electronic motion to optical oscillators which are treated in adiabatic approximation. First, various sizes of nonlinear cluster embedded in an infinite linear chain are considered. The initial excitation is applied either at the end-site or at the middle-site of the cluster. In both the cases we obtain two kinds of transition: (i) a cluster-trapping transition and (ii) a self-trapping transition. The dynamics of the quasiparticle with the end-site initial excitation are found to exhibit, (i) a sharp self-trapping transition, (ii) an amplitude-transition in the site-probabilities and (iii) propagating soliton-like waves in large clusters. Ballistic propagation is observed in random nonlinear systems. The effect of nonlinear impurities on the superdiffusive behavior of random-dimer model is also studied.Comment: 16 pages, REVTEX, 9 figures available upon request, To appear in Physical Review

Hamiltonian Hopf bifurcations in the discrete nonlinear Schr\"odinger trimer: oscillatory instabilities, quasiperiodic solutions and a 'new' type of self-trapping transition

Oscillatory instabilities in Hamiltonian anharmonic lattices are known to appear through Hamiltonian Hopf bifurcations of certain time-periodic solutions of multibreather type. Here, we analyze the basic mechanisms for this scenario by considering the simplest possible model system of this kind where they appear: the three-site discrete nonlinear Schr\"odinger model with periodic boundary conditions. The stationary solution having equal amplitude and opposite phases on two sites and zero amplitude on the third is known to be unstable for an interval of intermediate amplitudes. We numerically analyze the nature of the two bifurcations leading to this instability and find them to be of two different types. Close to the lower-amplitude threshold stable two-frequency quasiperiodic solutions exist surrounding the unstable stationary solution, and the dynamics remains trapped around the latter so that in particular the amplitude of the originally unexcited site remains small. By contrast, close to the higher-amplitude threshold all two-frequency quasiperiodic solutions are detached from the unstable stationary solution, and the resulting dynamics is of 'population-inversion' type involving also the originally unexcited site.Comment: 25 pages, 11 figures, to be published in J. Phys. A: Math. Gen. Revised and shortened version with few clarifying remarks adde

Reading faces: differential lateral gaze bias in processing canine and human facial expressions in dogs and 4-year-old children

Sensitivity to the emotions of others provides clear biological advantages. However, in the case of heterospecific relationships, such as that existing between dogs and humans, there are additional challenges since some elements of the expression of emotions are species-specific. Given that faces provide important visual cues for communicating emotional state in both humans and dogs, and that processing of emotions is subject to brain lateralisation, we investigated lateral gaze bias in adult dogs when presented with pictures of expressive human and dog faces. Our analysis revealed clear differences in laterality of eye movements in dogs towards conspecific faces according to the emotional valence of the expressions. Differences were also found towards human faces, but to a lesser extent. For comparative purpose, a similar experiment was also run with 4-year-old children and it was observed that they showed differential processing of facial expressions compared to dogs, suggesting a species-dependent engagement of the right or left hemisphere in processing emotions

Observer weighting of interaural cues in positive and negative envelope slopes of amplitude-modulated waveforms

The auditory system can encode interaural delays in highpass-filtered complex sounds by phase locking to their slowly modulating envelopes. Spectrotemporal analysis of interaurally time-delayed highpass waveforms reveals the presence of a concomitant interaural level cue. The current study systematically investigated the contribution of time and concomitant level cues carried by positive and negative envelope slopes of a modified sinusoidally amplitude-modulated (SAM) high-frequency carrier. The waveforms were generated from concatenation of individual modulation cycles whose envelope peaks were extended by the desired interaural delay, allowing independent control of delays in the positive and negative modulation slopes. In experiment 1, thresholds were measured using a 2-interval forced-choice adaptive task for interaural delays in either the positive or negative modulation slopes. In a control condition, thresholds were measured for a standard SAM tone. In experiment 2, decision weights were estimated using a multiple-observation correlational method in a single-interval forced-choice task for interaural delays carried simultaneously by the positive, and independently, negative slopes of the modulation envelope. In experiment 3, decision weights were measured for groups of 3 modulation cycles at the start, middle, and end of the waveform to determine the influence of onset dominance or recency effects. Results were consistent across experiments: thresholds were equal for the positive and negative modulation slopes. Decision weights were positive and equal for the time cue in the positive and negative envelope slopes. Weights were also larger for modulations cycles near the waveform onset. Weights estimated for the concomitant interaural level cue were positive for the positive envelope slope and negative for the negative slope, consistent with exclusive use of time cues.We thank Virginia M. Richards and Bruce G. Berg for helpful discussions. We also thank Brian C. J. Moore and an anonymous reviewer for their insightful comments on an earlier draft of the manuscript. Work supported by grants from the National Science Council, Taiwan NSC 98-2410-H-008-081-MY3 and NIH R01DC009659