Coherent transport of armchair graphene constrictions

The coherent transport properties of armchair graphene nanoconstrictions(GNC) are studied using tight-binding approach and Green's function method. We find a non-bonding state at zero Fermi energy which results in a zero conductance valley, when a single vacancy locates at $y=3n\pm 1$ of a perfect metallic armchair graphene nanoribbon(aGNR). However, the non-bonding state doesn't exist when a vacancy locates at y=3n, and the conductance behavior of lowest conducting channel will not be affected by the vacancy. For the square-shaped armchair GNC consisting of three metallic aGNR segments, resonant tunneling behavior is observed in the single channel energy region. We find that the presence of localized edge state locating at the zigzag boundary can affect the resonant tunneling severely. A simplified one dimensional model is put forward at last, which explains the resonant tunneling behavior of armchair GNC very well.Comment: 6 pages, 11 figure

Exploring the potential common denominator pathogenesis of system lupus erythematosus with COVID-19 based on comprehensive bioinformatics analysis

ObjectiveEvidences show that there may be a link between SLE and COVID-19. The purpose of this study is to screen out the diagnostic biomarkers of systemic lupus erythematosus (SLE) with COVID-19 and explore the possible related mechanisms by the bioinformatics approach.MethodsSLE and COVID-19 datasets were extracted separately from the NCBI Gene Expression Omnibus (GEO) database. The limma package in R was used to obtain the differential genes (DEGs). The protein interaction network information (PPI) and core functional modules were constructed in the STRING database using Cytoscape software. The hub genes were identified by the Cytohubba plugin, and TF-gene together with TF-miRNA regulatory networks were constructed via utilizing the Networkanalyst platform. Subsequently, we generated subject operating characteristic curves (ROC) to verify the diagnostic capabilities of these hub genes to predict the risk of SLE with COVID-19 infection. Finally, a single-sample gene set enrichment (ssGSEA) algorithm was used to analyze immune cell infiltration.ResultsA total of 6 common hub genes (CDC6, PLCG1, KIF15, LCK, CDC25C, and RASGRP1) were identified with high diagnostic validity. These gene functional enrichments were mainly involved in cell cycle, and inflammation-related pathways. Compared to the healthy controls, abnormal infiltration of immune cells was found in SLE and COVID-19, and the proportion of immune cells linked to the 6 hub genes.ConclusionOur research logically identified 6 candidate hub genes that could predict SLE complicated with COVID-19. This work provides a foothold for further study of potential pathogenesis in SLE and COVID-19

Phylogenetic and molecular characterization of coxsackievirus A24 variant isolates from a 2010 acute hemorrhagic conjunctivitis outbreak in Guangdong, China

<p>Abstract</p> <p>Background</p> <p>Acute hemorrhagic conjunctivitis is a common disease in China. As a notifiable disease, cases are registered by ophthalmologists on the AHC surveillance system. An AHC outbreak caused by CA24v was observed in Guangdong Province in 2007 by the National Disease Supervision Information Management System. Three years later, a larger outbreak occurred in Guangdong during the August-October period (2010). To characterize the outbreak and compare the genetic diversity of CA24v, which was determined to be the cause of the outbreak, the epidemiology and the molecular characterization of CA24v were analyzed in this study.</p> <p>Results</p> <p>A total of 69,635 cases were reported in the outbreak. 73.5% of index cases originated from students, children in kindergarten and factory workers, with the ≦ 9 age group at the highest risk. The male to female ratio was 1.84:1 among 0-19 years. 56 conjunctival swabs were collected to identify the causative agent from five cities with the AHC outbreak. 30 virus strains were isolated, and two of the genomes had the highest identity values (95.8%) with CA24v genomes. Four CA24v genotypes were identified by phylogenetic analysis for the VP1 and 3C regions. CA24v which caused the outbreak belonged to genotype IV. Furthermore, full nucleotide sequences for four representative isolates in 2010 and 2007 were determined and compared. 20 aa mutations, two nt insertions and one nt deletion were observed in the open reading frame, with 5'- and 3'- UTR respectively between them.</p> <p>Conclusions</p> <p>CA24v was determined to be the pathogen causing the outbreak and belongs to genotype IV. VP1 is more informative than 3C^Profor describing molecular epidemiology and we hypothesize that accumulative mutations may have promoted the outbreak.</p

Patterns of adverse childhood experiences and suicidal behaviors in adolescents: A four-province study in China

This is an accepted manuscript of a paper published by Elsevier on 23/02/2021, available online at: https://doi.org/10.1016/j.jad.2021.02.045 The accepted manuscript of the publication may differ from the final published version.Background:: Adverse childhood experiences (ACEs) are associated with increased suicidal behaviors in adolescents and most research has been restricted to certain types of or cumulative exposure to ACEs. Few studies have examined the association between patterns of ACEs and suicidal behaviors. Objective:: To identify the contributions of type and pattern of exposure to ACEs to suicidal behaviors and their gender differences among middle school students in China. Methods:: A school-based health survey was conducted in four provinces in China between 2017 and 2018. 14 500 students aged 10–20 years completed standard questionnaires, to record details of ACEs, suicide ideation, suicide plan, and suicide attempt. Results:: Latent class analysis indicated four distinct patterns of ACEs exposure: high ACEs (6.3%), high abuse and neglect (21.4%), high neglect (45.5%), and low ACEs (26.8%). Logistic analyses showed that, compared with low ACEs, the high ACEs were more likely to report suicidal behaviors. No gender differences were found in the independent effects of ACEs type or pattern on suicidal behaviors, except for the emotional neglect associated with suicidal behaviors in girls than boys. Limitations:: The study was cross-sectional and used self-reported questionnaires. Thus, it is difficult to establish a causal relationship between patterns of ACEs and suicidal behaviors. Conclusion:: Our findings addressed the need for a comprehensive consideration of ACEs in preventive healthcare work to identify children exposed to the most problematic ACE patterns. The study provided the evidence of targeted intervention to preempt the emergence of suicide behavior in at-risk students in adolescents.Funding for the project was provided by National Natural Science Foundation of China (82073576 & 81773453).Published versio

Association between abnormal plasma metabolism and brain atrophy in alcohol-dependent patients

ObjectiveIn this study, we aimed to characterize the plasma metabolic profiles of brain atrophy and alcohol dependence (s) and to identify the underlying pathogenesis of brain atrophy related to alcohol dependence.MethodsWe acquired the plasma samples of alcohol-dependent patients and performed non-targeted metabolomic profiling analysis to identify alterations of key metabolites in the plasma of BA-ADPs. Machine learning algorithms and bioinformatic analysis were also used to identify predictive biomarkers and investigate their possible roles in brain atrophy related to alcohol dependence.ResultsA total of 26 plasma metabolites were significantly altered in the BA-ADPs group when compared with a group featuring alcohol-dependent patients without brain atrophy (NBA-ADPs). Nine of these differential metabolites were further identified as potential biomarkers for BA-ADPs. Receiver operating characteristic curves demonstrated that these potential biomarkers exhibited good sensitivity and specificity for distinguishing BA-ADPs from NBA-ADPs. Moreover, metabolic pathway analysis suggested that glycerophospholipid metabolism may be highly involved in the pathogenesis of alcohol-induced brain atrophy.ConclusionThis plasma metabolomic study provides a valuable resource for enhancing our understanding of alcohol-induced brain atrophy and offers potential targets for therapeutic intervention

The FOXK1-CCDC43 Axis Promotes the Invasion and Metastasis of Colorectal Cancer Cells

Background/Aims: The CCDC43 gene is conserved in human, rhesus monkey, mouse and zebrafish. Bioinformatics studies have demonstrated the abnormal expression of CCDC43 gene in colorectal cancer (CRC). However, the role and molecular mechanism of CCDC43 in CRC remain unknown. Methods: The functional role of CCDC43 and FOXK1 in epithelial-mesenchymal transition (EMT) was determined using immunohistochemistry, flow cytometry, western blot, EdU incorporation, luciferase, chromatin Immunoprecipitation (ChIP) and cell invasion assays. Results: The CCDC43 gene was overexpressed in human CRC. High expression of CCDC43 protein was associated with tumor progression and poor prognosis in patients with CRC. Moreover, the induction of EMT by CCDC43 occurred through TGF-β signaling. Furthermore, a positive correlation between the expression patterns of CCDC43 and FOXK1 was observed in CRC cells. Promoter assays demonstrated that FOXK1 directly bound and activated the human CCDC43 gene promoter. In addition, CCDC43 was necessary for FOXK1- mediated EMT and metastasis in vitro and vivo. Taken together, this work identified that CCDC43 promoted EMT and was a direct transcriptional target of FOXK1 in CRC cells. Conclusion: FOXK1-CCDC43 axis might be helpful to develop the drugs for the treatment of CRC

Effects of the joint application of phosphate rock, ferric nitrate and plant ash on the immobility of As, Pb and Cd in soils

Phosphate rock (PR) and ferric salts have been frequently used to immobilize heavy metal(loid)s in soils, but in varied efficiencies referring to different metal(loid) pollutants. This study explored the effective application of plant ash (PA) to the previous formula of phosphate rock (PR) and ferric salts (Fe(NO3)(3)) (PR + Fe3++PA), compared to only PR, on the bioavailability and immobility of multi-metal(loid)s of selected arsenic (As), lead (Pb) and cadmium (Cd) in soils. Results from NaHCO3-extraction and toxicity characteristic leaching procedure (TCLP) implied the increase of the As mobility in soils by 7.0% and 2.6% using PR only, but the significant reduction of the As mobility by 24.2% and 82.4% jointly using PR + Fe3++PA. Meanwhile, the application of either PR alone or PR + Fe3++PA in soil significantly decreased Pb and Cd extracting in diethylene triamine pentacetate acid (DTPA) and TCLP, particularly, the immobilization effect of PR + Fe3+ +PA was better than that of PR. The leaching column test further confirmed the high durability of PR + Fe3++PA on the immobilization of As and Pb under the continuous acid exposure, but likely slightly increased the mobility of Cd (the accumulated concentration of Cd, 5.88 mu g/L) compared to that (3.16 mu g/L) in the untreated column (UN-column), which were both much lower than the level V (100 mu g/L) of the Chinese National Quality Standard for Surface Water (GB 3838-2002). Therefore, PR + Fe3++PA exhibited the significant enhancement on the immobilization of As, Pb and Cd under simulated acid rain (SAR) leaching

Factorial combinations of protein interactions generate a multiplicity of florigen activation complexes in wheat and barley.

The FLOWERING LOCUS T (FT) protein is a central component of a mobile flowering signal (florigen) that is transported from leaves to the shoot apical meristem (SAM). Two FT monomers and two DNA-binding bZIP transcription factors interact with a dimeric 14-3-3 protein bridge to form a hexameric protein complex. This complex, designated as the 'florigen activation complex' (FAC), plays a critical role in flowering. The wheat homologue of FT, designated FT1 (= VRN3), activates expression of VRN1 in the leaves and the SAM, promoting flowering under inductive long days. In this study, we show that FT1, other FT-like proteins, and different FD-like proteins, can interact with multiple wheat and barley 14-3-3 proteins. We also identify the critical amino acid residues in FT1 and FD-like proteins required for their interactions, and demonstrate that 14-3-3 proteins are necessary bridges to mediate the FT1-TaFDL2 interaction. Using in&nbsp;vivo bimolecular fluorescent complementation (BiFC) assays, we demonstrate that the interaction between FT1 and 14-3-3 occurs in the cytoplasm, and that this complex is then translocated to the nucleus, where it interacts with TaFDL2 to form a FAC. We also demonstrate that a FAC including FT1, TaFDL2 and Ta14-3-3C can bind to the VRN1 promoter in&nbsp;vitro. Finally, we show that relative transcript levels of FD-like and 14-3-3 genes vary among tissues and developmental stages. Since FD-like proteins determine the DNA specificity of the FACs, variation in FD-like gene expression can result in spatial and temporal modulation of the effects of mobile FT-like signals

Effective extraction and recovery of rare earth elements (REEs) in contaminated soils using a reusable biosurfactant

Tea saponin (TS), a plant derived biosurfactant, was used to investigate on its effectiveness on the extraction of three typically selected rare earth elements (REEs, light lanthanum (La), medium arrowhead (Dy) and heavy erbium (Er)) from contaminated soils, in the presence of important toxic heavy metals (lead (Pb) and cadmium (Cd)). A complete procedure, involving the extraction of REEs in soils, the recovery of REEs and TS in the extraction leachates and the reuse of the recovered TS, was established. Experimental results showed that the optimal extraction parameters were consumption of 1.2 g/g (TS/soil), pH of 5 and the extraction time of 24 h. The recovery efficiencies of La, Dy, Er, Cd and Pb achieved 96.9%, 88%, 84.3%, 88% and 91.1% using 0.3 g/g (Ca(OH)(2)/soil). The overall extraction efficiencies of La, Dy, Er, Cd and Pb were 53.9%, 73.2%, 71.7%, 95.9% and 38.8% by three times using the recovered TS solution. The extractable fractions of La, Dy, Er, Cd and Pb in soil were found to be highest in their acid soluble and reducible forms. Mechanisms studies indicated the increased binding strength (I-R) and the decreased mobility (M-F) of REEs and metals after the flushing with TS. Carboxyl groups in TS were attributed to the formation of complexation and agglomeration between TS and studied REEs and other metals, confirmed by the analysis of both the X-ray photoelectron spectroscopy (XPS) and the dynamic light scattering (DLS). This study established an environmentally-friendly contaminated soil remediation and the recovery of valuable REEs by the combination use of TS and calcium hydroxide. (C) 2020 Elsevier Ltd. All rights reserved

Bayesian Joint Modeling Analysis of Longitudinal Proportional and Survival Data

This paper focuses on a joint model to analyze longitudinal proportional and survival data. We utilize a logit transformation on the longitudinal proportional data and employ a partially linear mixed-effect model. With this model, we estimate the unknown function of time using the B-splines technique. Additionally, we introduce a centered Dirichlet process mixture model (CDPMM) to capture the random effects, allowing for a flexible distribution. The survival data are assumed using a Cox proportional hazard model, and the sharing random effects joint model is developed for the two types of data. We develop a Bayesian Lasso (BLasso) approach that combines the Gibbs sampler and the Metropolis–Hastings algorithm. The proposed method allows for the estimation of unknown parameters and the selection of significant covariates simultaneously. We evaluate the performance of our proposed methods through simulation studies and also provide an illustration of our methodologies using an example from the MA.5 research experiment