The Witten equation, mirror symmetry and quantum singularity theory

For any non-degenerate, quasi-homogeneous hypersurface singularity, we describe a family of moduli spaces, a virtual cycle, and a corresponding cohomological field theory associated to the singularity. This theory is analogous to Gromov-Witten theory and generalizes the theory of r-spin curves, which corresponds to the simple singularity A_{r-1}. We also resolve two outstanding conjectures of Witten. The first conjecture is that ADE-singularities are self-dual; and the second conjecture is that the total potential functions of ADE-singularities satisfy corresponding ADE-integrable hierarchies. Other cases of integrable hierarchies are also discussed.Comment: To appear in Annals of Mathematics. Includes resolution of the Witten ADE integrable hierarchies conjecture and Witten's ADE self-mirror conjecture. Several corrections and clarification

Responses of genes involved in cell cycle control to diverse DNA damaging chemicals in human lung adenocarcinoma A549 cells

BACKGROUND: Many anticancer agents and carcinogens are DNA damaging chemicals and exposure to such chemicals results in the deregulation of cell cycle progression. The molecular mechanisms of DNA damage-induced cell cycle alteration are not well understood. We have studied the effects of etoposide (an anticancer agent), cryptolepine (CLP, a cytotoxic alkaloid), benzo [a]pyrene (BaP, a carcinogenic polycyclic aromatic hydrocarbon) and 2-amino-1-methyl-6-phenylimidazo [4,5-b]pyridine (PhIP, a cooked-meat derived carcinogen) on the expression of cell cycle regulatory genes to understand the molecular mechanisms of the cell cycle disturbance. RESULTS: A549 cells were treated with DMSO or chemicals for up to 72 h and periodically sampled for cell cycle analysis, mRNA and protein expression. DMSO treated cells showed a dominant G1 peak in cell cycle at all times examined. Etoposide and CLP both induced G2/M phase arrest yet the former altered the expression of genes functioning at multiple phases, whilst the latter was more effective in inhibiting the expression of genes in G2-M transition. Both etoposide and CLP induced an accumulation of p53 protein and upregulation of p53 transcriptional target genes. Neither BaP nor PhIP had substantial phase-specific cell cycle effect, however, they induced distinctive changes in gene expression. BaP upregulated the expression of CYP1B1 at 6–24 h and downregulated many cell cycle regulatory genes at 48–72 h. By contrast, PhIP increased the expression of many cell cycle regulatory genes. Changes in the expression of key mRNAs were confirmed at protein level. CONCLUSION: Our experiments show that DNA damaging agents with different mechanisms of action induced distinctive changes in the expression pattern of a panel of cell cycle regulatory genes. We suggest that examining the genomic response to chemical exposure provides an exceptional opportunity to understand the molecular mechanism involved in cellular response to toxicants

The Atlantic Multidecadal Variability phase-dependence of teleconnection between the North Atlantic Oscillation in February and the Tibetan Plateau in March

The Tibetan Plateau (TP), referred to as the “Asian water tower,” contains one of the largest land ice masses on Earth. The local glacier shrinkage and frozen-water storage are strongly affected by variations in surface air temperature over the TP (TPSAT), especially in springtime. This study reveals that the relationship between the February North Atlantic Oscillation (NAO) and March TPSAT is unstable with time and regulated by the phase of the Atlantic multidecadal variability (AMV). The significant out-of-phase connection occurs only during the warm phase of AMV (AMV+). The results show that during the AMV+, the negative phase of the NAO persists from February to March, and is accompanied by a quasi-stationary Rossby wave train trapped along a northward-shifted subtropical westerly jet stream across Eurasia, inducing an anomalous adiabatic descent that warms the TP. However, during the cold phase of the AMV, the negative NAO cannot persist into March. The Rossby wave train propagates along the well-separated polar and subtropical westerly jets, and the NAO–TPSAT connection is broken. Further investigation suggests that the enhanced synoptic eddy and low-frequency flow (SELF) interaction over the North Atlantic in February and March during the AMV+, caused by the southward-shifted storm track, helps maintain the NAO pattern via positive eddy feedback. This study provides a new detailed perspective on the decadal variability of the North Atlantic–TP connection in late winter to early spring.publishedVersio

Microstructure and texture analysis of δ-hydride precipitation in Zircaloy-4 materials by electron microscopy and neutron diffraction

This work presents a detailed microstructure and texture study of various hydrided Zircaloy-4 materials by neutron diffraction and microscopy. The results show that the precipitated δ-ZrH1.66 generally follows the δ (111) //α (0001) and δ[]//α[] orientation relationship with the α-Zr matrix. The δ-hydride displays a weak texture that is determined by the texture of the α-Zr matrix, and this dependence essentially originates from the observed orientation correlation between α-Zr and δ-hydride. Neutron diffraction line profile analysis and high-resolution transmission electron microscopy observations reveal a significant number of dislocations present in the δ-hydride, with an estimated average density one order of magnitude higher than that in the α-Zr matrix, which contributes to the accommodation of the substantial misfit strains associated with hydride precipitation in the α-Zr matrix. The present observations provide an insight into the behaviour of δ-hydride precipitation in zirconium alloys and may help with understanding the induced embrittling effect of hydrides.Fil: Wang, Zhiyang. University of Wollongong; Australia. Australian Nuclear Science and Technology Organisation; AustraliaFil: Garbe, Ulf. Australian Nuclear Science and Technology Organisation; AustraliaFil: Li, Huijun. University of Wollongong; AustraliaFil: Wang, Yanbo. University of Sydney; AustraliaFil: Studer, Andrew J.. Australian Nuclear Science and Technology Organisation; AustraliaFil: Sun, Guangai. Institute of Nuclear Physics and Chemistry, CAEP; ChinaFil: Harrison, Robert P.. Australian Nuclear Science and Technology Organisation, Institute of Materials Engineering; AustraliaFil: Liao, Xiaozhou. University of Sydney; AustraliaFil: Vicente Alvarez, Miguel Angel. Comisión Nacional de Energía Atómica. Gerencia del Área de Energía Nuclear. Instituto Balseiro; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Santisteban, Javier Roberto. Comisión Nacional de Energía Atómica. Gerencia del Área de Energía Nuclear. Instituto Balseiro; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Kong, Charlie. University of New South Wales; Australi

Development of an electrochemical flow injection immunoassay (FIIA) for the real-time monitoring of biospecific interactions

Not only are sensors a revolution in analysis; they themselves are also experiencing a revolution brought about by parallel developments in sensor fabrication techniques and materials, polymer chemistry, signal processing methodologies, the increased use of biomolecular processes as a means of analyte detection, and the coupling of sensors to other techniques such as flow injection analysis. Many of these developments have been incorporated into the present study, which we are undertaking in the development of our immunosensor technology. The system described here utilises screen-printed electrodes which are low-cost, disposable devices that are simple to fabricate. Incorporated into our sensor is the electroactive polymer, polyaniline, which brings about mediatorless redox coupling between the electrode and biomolecular components attached to the polymer surface. This system also utilises enzyme-labelled antibodies as the biomolecular recognition component for the analysis of the test analyte, biotin. The system has also been integrated into a flow injection system. This has led to the monitoring of real-time antibody-antigen interactions using electrochemical methods and foreshadows the development of single-step immunosensors

Finding Complex Biological Relationships in Recent PubMed Articles Using Bio-LDA

The overwhelming amount of available scholarly literature in the life sciences poses significant challenges to scientists wishing to keep up with important developments related to their research, but also provides a useful resource for the discovery of recent information concerning genes, diseases, compounds and the interactions between them. In this paper, we describe an algorithm called Bio-LDA that uses extracted biological terminology to automatically identify latent topics, and provides a variety of measures to uncover putative relations among topics and bio-terms. Relationships identified using those approaches are combined with existing data in life science datasets to provide additional insight. Three case studies demonstrate the utility of the Bio-LDA model, including association predication, association search and connectivity map generation. This combined approach offers new opportunities for knowledge discovery in many areas of biology including target identification, lead hopping and drug repurposing.Comment: 14 pages, 8 figures, 10 table