Role of Dectin-1 in peripheral nerve injury

Dectin-1, a C-type lectin receptor, plays a role in nerve injury in the central nervous system. However, whether it plays a role in the peripheral nervous system is not well understood. Our study showed the expression of Dectin-1 on the membrane of macrophages. We also used a sciatic nerve crushing injury model to demonstrate that there was a delay in nerve degeneration-related processes such as breakdown of injured myelinated nerve fibers and formation of myelin ovoid in groups injected with whole glucan particle soluble (WGPS), a Dectin-1 antagonist. There were also fewer intraneural blood vessels in the Dectin-1 antagonist treated group. Our study suggested inhibiting Dectin-1 delayed debris clearance, nerve degeneration, and angiogenesis after peripheral nerve injury

Slip rates on the Chelungpu and Chushiang thrust faults inferred from a deformed strath terrace along the Dungpuna river, west central Taiwan

The Chelungpu fault produced the September 1999 M_w = 7.6 Chi-Chi earthquake, central Taiwan. The shortening rate accommodated by this structure, integrated over several seismic cycles, and its contribution to crustal shortening across the Taiwanese range have remained unresolved. To address the issues, we focus our study on the Chelungpu and Chushiang thrust faults within the southernmost portion of the Chi-Chi rupture area. Structural measurements and available seismic profiles are used to infer the subsurface geometry of structures. The Chushiang and Chelungpu faults appear as two splay faults branching onto a common ramp that further north connects only to the Chelungpu surface trace. We survey a deformed strath terrace along the Dungpuna river, buried under a 11,540 ± 309 years old fill deposit. Given this age, the dip angles of the faults, and the vertical throw determined from the offset of the strath terrace across the surface fault traces, we estimate slip rates of 12.9 ± 4.8 and 2.9 ± 1.6 mm/yr on the Chelungpu and Chushiang faults, respectively. These yield a total shortening rate of 15.8 ± 5.1 mm/yr to be absorbed on their common decollement at depth. This total value is an upper bound for the slip rate on the Chelungpu fault further north, where the Chushiang fault disappears and transfers shortening to adjacent faults. Combining these results with the recently constrained shortening rate on the Changhua blind thrust reveals that all these frontal faults presently absorb most of the long-term horizontal shortening across the Taiwanese range. They thus stand as the major sources of seismic hazards in this heavily populated area. The return period of earthquakes similar to the Chi-Chi event over a ∼80 km long stretch of the Western Foothills is estimated to be ~64 years. This value is an underestimate because it assumes that all the faults locked during the interseismic period slip only during such large events. Comparison with historical seismicity suggests that episodic aseismic deformation might also play a major role in accommodating shortening

Paper-Based ELISA: A Novel Diagnostic Approach for Monitoring Aqueous Humour VEGF Level in Ocular Diseases

We commonly diagnose ocular diseases via both morphological changes and symptoms. It is necessary to develop biochemically based assays for early or follow-up diagnosis of these diseases with a focus on robustness and ease of handling. To lay out a prospective path toward this goal, we describe and propose the use of ultrahigh sensitive paper-based ELISA (p-ELISA), which uses a treated piece of filter paper to monitor the activity of ocular diseases (i.e., detecting the vascular endothelial growth factor (VEGF) concentration in aqueous humour for proliferative diabetic retinopathy or age-related macular degeneration diagnosis). The advantages of p-ELISA include the following: (1) the capacity to directly measure biomarker concentrations in aqueous humour using only a tiny sample volume (as little as 2 μL); (2) significantly increased sensitivity compared to conventional ELISA (fg/mL levels); and (3) inexpensive materials and a short operation duration. P-ELISA is a novel point-of-care diagnostic tool with the significant potential to advance ophthalmological treatment guidelines by facilitating early detection and routinely monitoring therapeutic response

Functional Effects of let-7g Expression in Colon Cancer Metastasis.

MicroRNA regulation is crucial for gene expression and cell functions. It has been linked to tumorigenesis, development and metastasis in colorectal cancer (CRC). Recently, the let-7 family has been identified as a tumor suppressor in different types of cancers. However, the function of the let-7 family in CRC metastasis has not been fully investigated. Here, we focused on analyzing the role of let-7g in CRC. The Cancer Genome Atlas (TCGA) genomic datasets of CRC and detailed data from a Taiwanese CRC cohort were applied to study the expression pattern of let-7g. In addition, in vitro as well as in vivo studies have been performed to uncover the effects of let-7g on CRC. We found that the expression of let-7g was significantly lower in CRC specimens. Our results further supported the inhibitory effects of let-7g on CRC cell migration, invasion and extracellular calcium influx through store-operated calcium channels. We report a critical role for let-7g in the pathogenesis of CRC and suggest let-7g as a potential therapeutic target for CRC treatment

The Multi-Q web server for multiplexed protein quantitation

The Multi-Q web server provides an automated data analysis tool for multiplexed protein quantitation based on the iTRAQ labeling method. The web server is designed as a platform that can accommodate various input data formats from search engines and mass spectrometer manufacturers. Compared to the previous stand-alone version, the new web server version provides many enhanced features and flexible options for quantitation. The workflow of the web server is represented by a quantitation wizard so that the tool is easy to use. It also provides a friendly interface that helps users configure their parameter settings before running the program. The web server generates a standard report for quantitation results. In addition, it allows users to customize their output reports and information of interest can be easily highlighted. The output also provides visualization of mass spectral data so that users can conveniently validate the results. The Multi-Q web server is a fully automated and easy to use quantitation tool that is suitable for large-scale multiplexed protein quantitation. Users can download the Multi-Q Web Server from http://ms.iis.sinica.edu.tw/Multi-Q-Web

Various criteria in the evaluation of biomedical named entity recognition

BACKGROUND: Text mining in the biomedical domain is receiving increasing attention. A key component of this process is named entity recognition (NER). Generally speaking, two annotated corpora, GENIA and GENETAG, are most frequently used for training and testing biomedical named entity recognition (Bio-NER) systems. JNLPBA and BioCreAtIvE are two major Bio-NER tasks using these corpora. Both tasks take different approaches to corpus annotation and use different matching criteria to evaluate system performance. This paper details these differences and describes alternative criteria. We then examine the impact of different criteria and annotation schemes on system performance by retesting systems participated in the above two tasks. RESULTS: To analyze the difference between JNLPBA's and BioCreAtIvE's evaluation, we conduct Experiment 1 to evaluate the top four JNLPBA systems using BioCreAtIvE's classification scheme. We then compare them with the top four BioCreAtIvE systems. Among them, three systems participated in both tasks, and each has an F-score lower on JNLPBA than on BioCreAtIvE. In Experiment 2, we apply hypothesis testing and correlation coefficient to find alternatives to BioCreAtIvE's evaluation scheme. It shows that right-match and left-match criteria have no significant difference with BioCreAtIvE. In Experiment 3, we propose a customized relaxed-match criterion that uses right match and merges JNLPBA's five NE classes into two, which achieves an F-score of 81.5%. In Experiment 4, we evaluate a range of five matching criteria from loose to strict on the top JNLPBA system and examine the percentage of false negatives. Our experiment gives the relative change in precision, recall and F-score as matching criteria are relaxed. CONCLUSION: In many applications, biomedical NEs could have several acceptable tags, which might just differ in their left or right boundaries. However, most corpora annotate only one of them. In our experiment, we found that right match and left match can be appropriate alternatives to JNLPBA and BioCreAtIvE's matching criteria. In addition, our relaxed-match criterion demonstrates that users can define their own relaxed criteria that correspond more realistically to their application requirements