Laboratory Study of the Effects of Flexible Vegetation on Solute Diffusion in Unidirectional Flow

Background Flexible vegetation is an important part of the riverine ecosystem, which can reduce flow velocity, change turbulence structure, and affect the processes of solute transport. Compared with the flow with rigid vegetation, which has been reported in many previous studies, bending of flexible vegetation increases the complexity of the flow-vegetation-solute interactions. In this study, laboratory experiments are carried out to investigate the influence of flexible vegetation on solute transport, and methods for estimating the lateral and longitudinal diffusion coefficients in the rigid vegetated flow are examined for their applications to the flow with flexible vegetation. Results The experimental observations find that vegetation can significantly reduce flow velocity, and the Manning coefficient increases with increasing vegetation density and decreases with inflow discharge. Under all the cases, the vertical peak of the solute concentration moves towards the bottom bed along the flow, and the values of vertical peak concentration longitudinally decreases from the injection point. The lateral diffusion coefficients Dy increase with vegetation density, while the longitudinal diffusion coefficients DL are opposite. Both Dy and DL increase with the inflow discharge. To estimate the Dy and DL in the flow with flexible vegetation, an effective submerged vegetation height considering vegetation bending is incorporated in the methods proposed for flow with rigid vegetation (Lou et al. Environ Sci Eur 32:15, 2020). The modified approach can well predict the diffusion coefficients in the experiments with the relative errors in the range of 5%-12%. Conclusions The methods proposed in this study can be used to estimate the lateral and longitudinal diffusion coefficients in flows through both rigid and flexible vegetations using the effective submerged vegetation height

Evaluation of the Hair Cell Regeneration in Zebrafish Larvae by Measuring and Quantifying the Startle Responses

The zebrafish has become an established model organism for the study of hearing and balance systems in the past two decades. The classical approach to examine hair cells is to use dye to conduct selective staining, which shows the number and morphology of hair cells but does not reveal their function. Startle response is a behavior closely related to the auditory function of hair cells; therefore it can be used to measure the function of hair cells. In this study, we developed a device to measure the startle response of zebrafish larvae. By applying various levels of stimulus, it showed that the system can discern a 10 dB difference. The hair cell in zebrafish can regenerate after damage due to noise exposure or drug treatment. With this device, we measured the startle response of zebrafish larvae during and after drug treatment. The results show a similar trend to the classical hair cell staining method. The startle response was reduced with drug treatment and recovered after removal of the drug. Together it demonstrated the capability of this behavioral assay in evaluating the hair cell functions of fish larvae and its potential as a high-throughput screening tool for auditory-related gene and drug discovery

Membrane-inserted conformation of transmembrane domain 4 of divalent-metal transporter.

Divalent-metal transporter 1 (DMT1) is involved in the intestinal iron absorption and in iron transport in the transferrin cycle. It transports metal ions at low pH ( approximately 5.5), but not at high pH (7.4), and the transport is a proton-coupled process. Previously it has been shown that transmembrane domain 4 (TM4) is crucial for the function of this protein. Here we provide the first direct experimental evidence for secondary-structural features and membrane insertions of a 24-residue peptide, corresponding to TM4 of DMT1 (DMTI-TM4), in various membrane-mimicking environments by the combined use of CD and NMR spectroscopies. The peptide mainly adopts an alpha-helical structure in trifluoroethanol, SDS and dodecylphosphocholine micelles, and dimyristoyl phosphatidylcholine and dimyristoyl phosphatidylglycerol small unilamellar vesicles. It has been demonstrated from both Halpha secondary shifts and nuclear-Overhauser-enhancement (NOE) connectivities that the peptide is well folded into an alpha-helix from Val(8) to Lys(23) in SDS micelles at pH 4.0, whereas the N-terminus is highly flexible. The alpha-helical content estimated from NMR data is in agreement with that extracted from CD simulations. The highest helicity was observed in the anionic phospholipids [1,2-dimyristoyl- sn -glycero-3-[phospho-rac -(1-glycerol)]], indicating that electrostatic attraction is important for peptide binding and insertion into the membranes. The secondary-structural transition of the peptide occurred at pH 4.3 in the 2,2,2-trifluoroethanol (TFE) water mixed solvent, whereas at a higher pH value (5.6) in SDS micelles, DMT1-TM4 exhibited a more stable structure in SDS micelles than that in TFE in terms of changing the pH and temperature. PAGE did not show high-molecular-mass aggregates in SDS micelles. The position of the peptide relative to SDS micelles was probed by the effects of 5- and 16-doxylstearic acids on the intensities of the peptide proton resonances. The results showed that the majority of the peptide is inserted into the hydrophobic interior of SDS micelles, whereas the C-terminal residues are surface-exposed. The ability of DMT1-TM4 to assume transmembrane features may be crucial for its biological function in vivo

Osteochondroma: Review of 431 patients from one medical institution in South China

Background: The geographic distribution of osteochondroma (OC) varies greatly around the world. There has been no recent report on OC in a large Chinese population. The aim of this study was to characterize OC by an epidemiological analysis of the clinical data from one medical institution in South China. Methods: We searched medical electronic records from January 2001 to January 2016 in one large hospital in South China to identify patients with a definite diagnosis of OC. Their epidemiological data were collected and analyzed statistically, including gender, tumor site, age at first diagnosis and symptoms, local recurrence and malignant transformation. Differences between genders and between solitary osteochondroma (SO) and multiple osteochondroma (MO) were particularly analyzed. Results: A total of 431 OC patients (291 males and 140 females; 329 SOs and 102 MOs) were identified. The gender ratio was 2.08 with a male predominance. OCs were mostly located around the knee (250 cases). 280 patients were in their 0s to 20s upon first diagnosis. The average age at the time of first diagnosis was 20.63 years for all, 18.47 years for males and 25.11 years for females (P=0.000). OC recurred locally in 35 patients (15 SOs and 20 MOs), with a significant difference between SO/MO (P=0.000) but not between genders (P=0.100). The average interval from the primary surgery to local or malignant recurrence was 37.41 months. Malignant transformation was found in 5 patients (4 males and 1 female), showing no gender difference (P=0.549). Conclusions: OC may have a male predominance in Chinese population. It mostly occurred at 0–20 years of age and around the knee. Upon the first diagnosis of OC, the males tended to be younger than the females, and so did the MO patients than the SO ones. In addition, MO had a higher incidence of local recurrence. Intervals from primary surgery to local recurrence or malignant transformation in MO patients were longer than in SO patients

Formation of macromolecules with peptide bonds via the thermal evolution of amino acids in the presence of montmorillonite: Insight into prebiotic geochemistry on the early Earth

The formation of macromolecules is an indispensable step in the process leading to the appearance of life on Earth. As their constituents were widely distributed over geological time and space on the surface of the primitive Earth, clay minerals are regarded as an essential factor influencing the formation of macromolecules due to their high reactivity and their close association with organic matter that could be the precursors of macromolecules. Over the years, many researchers have studied the roles of clay minerals in macromolecules formation through the condensation of amino acids (AAs) in aqueous systems in order to understand the thermal evolution of organic matter (OM) in pristine oceans. However, the condensation of AAs in non-aqueous systems has received limited attention. In particular, the stability and evolution of AAs in volcanic eruption environments that are rich in clay minerals have rarely been investigated. In this work, the influence of clay mineral on the thermal evolution of AAs was studied. Two types of clay-AA complexes, i.e., clay-AA interlayer complexes and clay-AA external complexes (where AAs exist outside the interlayer structure) were used. An expandable clay mineral, montmorillonite (Mt), was chosen as the typical clay mineral, and L-arginine (Arg) and glycine (Gly) were used as the model AAs for the preparation of clay-AA complexes. In situ diffuse-reflectance infrared Fourier transform spectroscopy (in situ DRIFT) was used to monitor the thermal evolution behaviors of the clay-AA complexes, such as the formation of macromolecules with peptide bonds, and thermogravimetry (TG) and TG coupled with Fourier transform infrared spectroscopy (TG-FTIR) analyses were used to investigate the decomposition of the produced macromolecules. The results show that Mt strongly affects macromolecules formation during the thermal evolution of AAs, which is mainly due to that the inherent solid acidity of the different structural sites of Mt varies. When AAs are present on the external surfaces of Mt, the interaction between AAs and clay minerals substantially decreases the initial formation temperature of the macromolecules with peptide bonds (for Arg) and strongly affects the types of condensation products (for Gly). When AAs exist in the interlayer structure of Mt, the interlayer structure has a steric effect on the thermal evolution of these monomers, which, together with the effects of the molecular structure of Arg, enhances the initial temperature of condensation and increases the thermal decomposition temperature of the formed macromolecules. Regardless of whether AAs exist in the interlayer sites or on the external surfaces of clay minerals, clay-OM association is able to protect macromolecules, postponing their thermal decomposition. The present work indicates that macromolecules with peptide bonds could readily form via the condensation of AAs under dry high-temperature conditions, which implies that non-aqueous thermal conditions resulting from volcanic activities might be a favorable geological setting for prebiotic chemical evolution on the early Earth

Proangiogenic compositions of microvesicles derived from human umbilical cord mesenchymal stem cells.

Microvesicles (MVs) derived from mesenchymal stem cells (MSCs) have been shown to promote angiogenesis. This study was aimed to shed a light on the mechanisms by analyzing the angiogenesis-promoting compositions of MSC-MVs. Also we try to figure out the impact of hypoxia on angiogenesis.MVs were isolated from the culture supernatants of MSCs under hypoxia/normoxia and serum-deprivation condition. The morphological features of MVs were revealed by an electron microscope and the origin of the MVs was identified by a bead-bound assay. An antibody array was used to analyze the expression of angiogenic cytokines from MVs and the parent MSCs as well. The major candidate factors were screened and the results were validated by immune blotting.MSC-MVs were around 80 nm in diameter. They expressed CD29, CD44, and CD73, but not CD31 and CD45. Antibody array showed that both MSCs and MVs expressed many angiogenesis-promoting biomolecules, including interleukin-6 (IL-6), basic fibroblast growth factors (bFGF), and recptor of urokinase-type plasminogen activator (UPAR). MSC-MVs contained angiogenin, vascular endothelial growth factor (VEGF), monocyte chemotactic protein-1 (MCP-1) and the receptor-2 for vascular endothelial growth factor at higher levels than the parent MSCs. Under hypoxic condition most cytokines were expressed in greater quantity than normoxic in MSCs while in MVs there was no significant difference between hypoxic and normoxic conditions except UPAR, Angiogenin, VEGF, IGF, Tie-2/TEK, and IL-6 which were higher in MVs under hypoxic conditions than those in normoxic condition.Upon serum-deprivation condition, MSCs could secrete MVs that contain a variety of factors contributing to their angiogenesis-promoting function. And among them, Angiogenin, VEGF, MCP-1, VEGF R2 might be of greater importance than the other cytokines. Also UPAR, Angiogenin, VEGF, IGF, Tie-2/TEK, IL-6 might be responsible for hypoxia-augmented proangiogenic effects of MVs