Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2

Placozoa is an enigmatic phylum of simple, microscopic, marine metazoans(1,2). Although intracellular bacteria have been found in all members of this phylum, almost nothing is known about their identity, location and interactions with their host(3-6). We used metagenomic and metatranscriptomic sequencing of single host individuals, plus metaproteomic and imaging analyses, to show that the placozoan Trichoplax sp. H2 lives in symbiosis with two intracellular bacteria. One symbiont forms an undescribed genus in the Midichloriaceae (Rickettsiales)(7,8) and has a genomic repertoire similar to that of rickettsial parasites(9,10), but does not seem to express key genes for energy parasitism. Correlative image analyses and three-dimensional electron tomography revealed that this symbiont resides in the rough endoplasmic reticulum of its host's internal fibre cells. The second symbiont belongs to the Margulisbacteria, a phylum without cultured representatives and not known to form intracellular associations(11-13). This symbiont lives in the ventral epithelial cells of Trichoplax, probably metabolizes algal lipids digested by its host and has the capacity to supplement the placozoan's nutrition. Our study shows that one of the simplest animals has evolved highly specific and intimate associations with symbiotic, intracellular bacteria and highlights that symbioses can provide access to otherwise elusive microbial dark matter

Domain wall mobility in nanowires: transverse versus vortex walls

The motion of domain walls in ferromagnetic, cylindrical nanowires is investigated numerically by solving the Landau-Lifshitz-Gilbert equation for a classical spin model in which energy contributions from exchange, crystalline anisotropy, dipole-dipole interaction, and a driving magnetic field are considered. Depending on the diameter, either transverse domain walls or vortex walls are found. The transverse domain wall is observed for diameters smaller than the exchange length of the given material. Here, the system behaves effectively one-dimensional and the domain wall mobility agrees with a result derived for a one-dimensional wall by Slonczewski. For low damping the domain wall mobility decreases with decreasing damping constant. With increasing diameter, a crossover to a vortex wall sets in which enhances the domain wall mobility drastically. For a vortex wall the domain wall mobility is described by the Walker-formula, with a domain wall width depending on the diameter of the wire. The main difference is the dependence on damping: for a vortex wall the domain wall mobility can be drastically increased for small values of the damping constant up to a factor of $1/\alpha^2$.Comment: 5 pages, 6 figure

Temperature-dependent ferromagnetic resonance via the Landau-Lifshitz-Bloch equation: Application to FePt

Using the Landau-Lifshitz-Bloch (LLB) equation for ferromagnetic materials, we derive analytic expressions for temperature dependent absorption spectra as probed by ferromagnetic resonance (FMR). By analysing the resulting expressions, we can predict the variation of the resonance frequency and damping with temperature and coupling to the thermal bath. We base our calculations on the technologically relevant L1$_0$ FePt, parameterised from atomistic spin dynamics simulations, with the Hamiltonian mapped from ab-initio parameters. By constructing a multi-macrospin model based on the LLB equation and exploiting GPU acceleration we extend the study to investigate the effects on the damping and resonance frequency in {\backslashmu}m sized structures

High‐contiguity genome assembly of the chemosynthetic gammaproteobacterial endosymbiont of the cold seep tubeworm Lamellibrachia barhami

Symbiotic relationships between vestimentiferan tubeworms and chemosynthetic Gammaproteobacteria build the foundations of many hydrothermal vent and hydrocarbon seep ecosystems in the deep sea. The association between the vent tubeworm Riftia pachyptila and its endosymbiont Candidatus Endoriftia persephone has become a model system for symbiosis research in deep‐sea vestimentiferans, while markedly fewer studies have investigated symbiotic relationships in other tubeworm species, especially at cold seeps. Here we sequenced the endosymbiont genome of the tubeworm Lamellibrachia barhami from a cold seep in the Gulf of California, using short‐ and long‐read sequencing technologies in combination with Hi‐C and Dovetail Chicago libraries. Our final assembly had a size of ~4.17 MB, a GC content of 54.54%, 137X coverage, 4153 coding sequences, and a CheckM completeness score of 97.19%. A single scaffold contained 99.51% of the genome. Comparative genomic analyses indicated that the L. barhami symbiont shares a set of core genes and many metabolic pathways with other vestimentiferan symbionts, while containing 433 unique gene clusters that comprised a variety of transposases, defence‐related genes and a lineage‐specific CRISPR/Cas3 system. This assembly represents the most contiguous tubeworm symbiont genome resource to date and will be particularly valuable for future comparative genomic studies investigating structural genome evolution, physiological adaptations and host‐symbiont communication in chemosynthetic animal‐microbe symbioses

Monte Carlo simulation with time step quantification in terms of Langevin dynamics

For the description of thermally activated dynamics in systems of classical magnetic moments numerical methods are desirable. We consider a simple model for isolated magnetic particles in a uniform field with an oblique angle to the easy axis of the particles. For this model, a comparison of the Monte Carlo method with Langevin dynamics yields new insight in the interpretation of the Monte Carlo process, leading to the implementation of a new algorithm where the Monte Carlo step is time-quantified. The numeric results for the characteristic time of the magnetisation reversal are in excellent agreement with asymptotic solutions which itself are in agreement with the exact numerical results obtained from the Fokker-Planck equation for the Neel-Brown model.Comment: 5 pages, Revtex, 4 Figures include

Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions.

Deep-sea Bathymodiolus mussels and their chemoautotrophic symbionts are well-studied representatives of mutualistic host-microbe associations. However, how host-symbiont interactions vary on the molecular level between related host and symbiont species remains unclear. Therefore, we compared the host and symbiont metaproteomes of Pacific B. thermophilus, hosting a thiotrophic symbiont, and Atlantic B. azoricus, containing two symbionts, a thiotroph and a methanotroph. We identified common strategies of metabolic support between hosts and symbionts, such as the oxidation of sulfide by the host, which provides a thiosulfate reservoir for the thiotrophic symbionts, and a cycling mechanism that could supply the host with symbiont-derived amino acids. However, expression levels of these processes differed substantially between both symbioses. Backed up by genomic comparisons, our results furthermore revealed an exceptionally large repertoire of attachment-related proteins in the B. thermophilus symbiont. These findings imply that host-microbe interactions can be quite variable, even between closely related systems

Magnetization switching in a Heisenberg model for small ferromagnetic particles

We investigate the thermally activated magnetization switching of small ferromagnetic particles driven by an external magnetic field. For low uniaxial anisotropy the spins can be expected to rotate coherently, while for sufficient large anisotropy they should behave Ising-like, i.e., the switching should then be due to nucleation. We study this crossover from coherent rotation to nucleation for the classical three-dimensional Heisenberg model with a finite anisotropy. The crossover is influenced by the size of the particle, the strength of the driving magnetic field, and the anisotropy. We discuss the relevant energy barriers which have to be overcome during the switching, and find theoretical arguments which yield the energetically favorable reversal mechanisms for given values of the quantities above. The results are confirmed by Monte Carlo simulations of Heisenberg and Ising models.Comment: 8 pages, Revtex, 11 Figures include

Langevin Simulation of Thermally Activated Magnetization Reversal in Nanoscale Pillars

Numerical solutions of the Landau-Lifshitz-Gilbert micromagnetic model incorporating thermal fluctuations and dipole-dipole interactions (calculated by the Fast Multipole Method) are presented for systems composed of nanoscale iron pillars of dimension 9 nm x 9 nm x 150 nm. Hysteresis loops generated under sinusoidally varying fields are obtained, while the coercive field is estimated to be 1979 $\pm$ 14 Oe using linear field sweeps at T=0 K. Thermal effects are essential to the relaxation of magnetization trapped in a metastable orientation, such as happens after a rapid reversal of an external magnetic field less than the coercive value. The distribution of switching times is compared to a simple analytic theory that describes reversal with nucleation at the ends of the nanomagnets. Results are also presented for arrays of nanomagnets oriented perpendicular to a flat substrate. Even at a separation of 300 nm, where the field from neighboring pillars is only $\sim$ 1 Oe, the interactions have a significant effect on the switching of the magnets.Comment: 19 pages RevTeX, including 12 figures, clarified discussion of numerical technique

Dynamic phase transitions in thin ferromagnetic films

Monte Carlo simulations have been used to investigate the dynamic phase behavior of a classical Heisenberg spin system with a bilinear exchange anisotropy in a planar thin film geometry. Studies of the field amplitude, frequency and temperature dependence show dynamic phase transitions in films subject to a pulsed oscillatory external field. Thin films with competing surface fields show separate and distinct dynamic phase transitions for the bulk and surface layers of the film. Between the two transitions, a mixed state with coexisting dynamically ordered and dynamically disordered phases is observed in the film. In contrast, the free film with no surface fields shows a single dynamic phase transition as in a bulk system.Comment: 25 pages including figures in pdf format, to be published in PR