Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA

Human immunodeficiency virus (HIV)-1 amino acid sequence polymorphisms associated with expression of specific human histocompatibility leukocyte antigen (HLA) class I alleles suggest sites of cytotoxic T lymphocyte (CTL)-mediated selection pressure and immune escape. The associations most frequently observed are between expression of an HLA class I molecule and variation from the consensus sequence. However, a substantial number of sites have been identified in which particular HLA class I allele expression is associated with preservation of the consensus sequence. The mechanism behind this is so far unexplained. The current studies, focusing on two examples of “negatively associated” or apparently preserved epitopes, suggest an explanation for this phenomenon: negative associations can arise as a result of positive selection of an escape mutation, which is stable on transmission and therefore accumulates in the population to the point at which it defines the consensus sequence. Such negative associations may only be in evidence transiently, because the statistical power to detect them diminishes as the mutations accumulate. If an escape variant reaches fixation in the population, the epitope will be lost as a potential target to the immune system. These data help to explain how HIV is evolving at a population level. Understanding the direction of HIV evolution has important implications for vaccine development

Historic Roots of Modern Residential Segregation in a Southwestern Metropolis: San Antonio, Texas in 1910 and 2010

This study seeks to understand the historic roots of modern segregation by comparing residential racial patterns in the city of San Antonio over time. The year 1910 is recreated for San Antonio by georeferencing and digitizing historic Sanborn maps and aligning residential structures with historical census and city directory race data for the head of household. The historical point data are aggregated to the census block level and compared to 2010 householder race data by calculating the two most common dimensions of residential segregation: evenness (dissimilarity and Theil’s index) and exposure (isolation and interaction). The findings reveal that by 1910 San Antonio was already a remarkably segregated city and the original patterns of residential segregation resemble contemporary San Antonio. Particularly, residential racial segregation in the Hispanic concentrated southwestern portion of the city has increased over time resulting in an exceptionally racially divided metropolis

Concentration‐discharge relationships of dissolved rhenium in Alpine catchments reveal its use as a tracer of oxidative weathering

Oxidative weathering of sedimentary rocks plays an important role in the global carbon cycle. Rhenium (Re) has been proposed as a tracer of rock organic carbon (OCpetro) oxidation. However, the sources of Re and its mobilization by hydrological processes remain poorly constrained. Here, we examine dissolved Re as a function of water discharge, using samples collected from three alpine catchments that drain sedimentary rocks in Switzerland (Erlenbach and Vogelbach) and Colorado, USA (East River). The Swiss catchments reveal a higher dissolved Re flux in the catchment with higher erosion rates, but have similar [Re]/[Na+] and [Re]/[SO42−] ratios, which indicate a dominance of Re from OCpetro. Despite differences in rock type and hydro-climatic setting, the three catchments have a positive correlation between river water [Re]/[Na+] and [Re]/[SO42−] and water discharge. We propose that this reflects preferential routing of Re from a near-surface, oxidative weathering zone. The observations support the use of Re as a proxy to trace rock-organic carbon oxidation, and suggest it may be a hydrological tracer of vadose zone processes. We apply the Re proxy and estimate CO2 release by OCpetro oxidation of 5.7 +6.6/−2.0 tC km−2 yr−1 for the Erlenbach. The overall weathering intensity was ∼40%, meaning that the corresponding export of unweathered OCpetro in river sediments is large, and the findings call for more measurements of OCpetro oxidation in mountains and rivers as they cross floodplains

The Notch Ligand Jagged1 Regulates the Osteoblastic Lineage by Maintaining the Osteoprogenitor Pool

Notch signaling is critical for osteoblastic differentiation; however, the specific contribution of individual Notch ligands is unknown. Parathyroid hormone (PTH) regulates the Notch ligand Jagged1 in osteoblastic cells. To determine if osteolineage Jagged1 contributes to bone homeostasis, selective deletion of Jagged1 in osteolineage cells was achieved through the presence of Prx1 promoter-driven Cre recombinase expression, targeting mesenchymal stem cells (MSCs) and their progeny (PJag1 mice). PJag1 mice were viable and fertile and did not exhibit any skeletal abnormalities at 2 weeks of age. At 2 months of age, however, PJag1 mice had increased trabecular bone mass compared to wild-type (WT) littermates. Dynamic histomorphometric analysis showed increased osteoblastic activity and increased mineral apposition rate. Immunohistochemical analysis showed increased numbers of osteocalcin-positive mature osteoblasts in PJag1 mice. Also increased phenotypically defined Lin(-)/CD45(-)/CD31(-)/Sca1(-)/CD51(+) osteoblastic cells were measured by flow cytometric analysis. Surprisingly, phenotypically defined Lin(-)/CD45(-)/CD31(-)/Sca1(+)/CD51(+) MSCs were unchanged in PJag1 mice as measured by flow cytometric analysis. However, functional osteoprogenitor (OP) cell frequency, measured by Von Kossa(+) colony formation, was decreased, suggesting that osteolineage Jagged1 contributes to maintenance of the OP pool. The trabecular bone increases were not due to osteoclastic defects, because PJag1 mice had increased bone resorption. Because PTH increases osteoblastic Jagged1, we sought to understand if osteolineage Jagged1 modulates PTH-mediated bone anabolism. Intermittent PTH treatment resulted in a significantly greater increase in BV/TV in PJag1 hind limbs compared to WT. These findings demonstrate a critical role of osteolineage Jagged1 in bone homeostasis, where Jagged1 maintains the transition of OP to maturing osteoblasts. This novel role of Jagged1 not only identifies a regulatory loop maintaining appropriate populations of osteolineage cells, but also provides a novel approach to increase trabecular bone mass, particularly in combination with PTH, through modulation of Jagged1. (C) 2017 American Society for Bone and Mineral Research