Potential, attainable, and current levels of global crop diversity

High levels of crop species diversity are considered beneficial. However, increasing diversity might be difficult because of environmental constraints and the reliance on a few major crops for most food supply. Here we introduce a theoretical framework of hierarchical levels of crop diversity, in which the environmental requirements of crops limit potential diversity, and the demand for agricultural products further constrain attainable crop diversity. We estimated global potential, attainable, and current crop diversity for grid cells of 86 km2 . To do so, we first estimated cropland suitability values for each of 171 crops, with spatial distribution models to get estimations of relative suitability and with a crop model to estimate absolute suitability. We then used a crop allocation algorithm to distribute the required crop area to suitable cropland. We show that the attainable crop diversity is lower in temperate and continental areas than in tropical and coastal regions. The diversity gap (the difference between attainable and current crop diversity) is particularly large in most of the Americas and relatively small in parts of Europe and East Asia. By filling these diversity gaps, crop diversity could double on 84% of the world’s agricultural land without changing the aggregate amount of global food produced. It follows that while there are important regional differences in attainable diversity, specialization of farms and regions is the main reason for low levels of local crop diversity across the globe, rather than our high reliance on a few crops.EEA BalcarceFil: Aramburu Merlos, Fernando. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina.Fil: Aramburu Merlos, Fernando. University of California Davis. Department of Environmental Science and Policy; Estados Unidos.Fil: Hijmans, Robert J. University of California Davis. Department of Environmental Science and Policy; Estados Unidos

The scale dependency of spatial crop species diversity and its relation to temporal diversity

Increasing crop species diversity can enhance agricultural sustainability, but the scale dependency of the processes that shape diversity and of the effects of diversity on agroecosystems is insufficiently understood. We used 30 m spatial resolution crop classification data for the conterminous United States to analyze spatial and temporal crop species diversity and their relationship. We found that the US average temporal (crop rotation) diversity is 2.1 effective number of species and that a crop’s average temporal diversity is lowest for common crops. Spatial diversity monotonically increases with the size of the unit of observation, and it is most strongly associated with temporal diversity when measured for areas of 100 to 400 ha, which is the typical US farm size. The association between diversity in space and time weakens as data are aggregated over larger areas because of the increasing diversity among farms, but at intermediate aggregation levels (counties) it is possible to estimate temporal diversity and farm-scale spatial diversity from aggregated spatial crop diversity data if the effect of beta diversity is considered. For larger areas, the diversity among farms is usually much greater than the diversity within them, and this needs to be considered when analyzing large-area crop diversity data. US agriculture is dominated by a few major annual crops (maize, soybean, wheat) that are mostly grown on fields with a very low temporal diversity. To increase crop species diversity, currently minor crops would have to increase in area at the expense of these major crops.EEA BalcarceFil: Aramburu Merlos, Fernando. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina.Fil: Aramburu Merlos, Fernando. University of California Davis. Department of Environmental Science and Policy; Estados Unidos.Fil: Hijmans, Robert. University of California Davis. Department of Environmental Science and Policy; Estados Unidos

BioGeomancer: Automated Georeferencing to Map the World's Biodiversity Data

The BioGeomancer Project provides a toolkit to georeference data and specimens collected for natural history collections, a crucial task if the potential of these specimens is to be fully realized

Mapping sweet potato in Eastern Africa

Simon T. Gichuki and Robert J. Hijmans report on a project that is collecting germplasm samples and local knowledge of sweet potato varieties in Eastern Africa with the help of DIVA-GIS, a free geographic information system (GIS)

Spectral Signature Generalization and Expansion Can Improve the Accuracy of Satellite Image Classification

Conventional supervised classification of satellite images uses a single multi-band image and coincident ground observations to construct spectral signatures of land cover classes. We compared this approach with three alternatives that derive signatures from multiple images and time periods: (1) signature generalization: spectral signatures are derived from multiple images within one season, but perhaps from different years; (2) signature expansion: spectral signatures are created with data from images acquired during different seasons of the same year; and (3) combinations of expansion and generalization. Using data for northern Laos, we assessed the quality of these different signatures to (a) classify the images used to derive the signature, and (b) for use in temporal signature extension, i.e., applying a signature obtained from data of one or several years to images from other years. When applying signatures to the images they were derived from, signature expansion improved accuracy relative to the conventional method, and variability in accuracy declined markedly. In contrast, signature generalization did not improve classification. When applying signatures to images of other years (temporal extension), the conventional method, using a signature derived from a single image, resulted in very low classification accuracy. Signature expansion also performed poorly but multi-year signature generalization performed much better and this appears to be a promising approach in the temporal extension of spectral signatures for satellite image classification

MAIZE YIELD ESTIMATION IN KENYA USING MODIS

Abstract. Monitoring staple crop production can support agricultural research, business such as crop insurance, and government policy. Obtaining accurate estimates through field work is very expensive, and estimating it through remote sensing is promising. We estimated county-level maize yield for the 37 maize producing countries in Kenya from 2010 to 2017 using Moderate Resolution Imaging Spectroradiometer (MODIS) data. Support Vector Regression (SVR) and Random Forest (RF) were used to fit models with observed county level maize yield as a function of vegetation indices. The following five MODIS vegetation indices were used: green normalized difference vegetation index, normalized difference vegetation index, normalized difference moisture index, gross primary production, and fraction of photosynthetically active radiation. The models were evaluated with 5-fold leave one year out cross-validation. For SVR, R2 was 0.70, the Root Mean Square Error (RMSE) was 0.50 MT/ha and Mean Absolute Percentage Error (MAPE) was 27.6%. On the other hand for RF these were 0.69, 0.51 MT/ha and 29.3% respectively. These results are promising and should be tested in specific applications to understand if they are good enough for use

Estimating lime requirements for tropical soils: Model comparison and development

Acid tropical soils may become more productive when treated with agricultural lime, but optimal lime rates have yet to be determined in many tropical regions. In these regions, lime rates can be estimated with lime requirement models based on widely available soil data. We reviewed seven of these models and introduced a new model (LiTAS). We evaluated the models’ ability to predict the amount of lime needed to reach a target change in soil chemical properties with data from four soil incubation studies covering 31 soil types. Two foundational models, one targeting acidity saturation and the other targeting base saturation, were more accurate than the five models that were derived from them, while the LiTAS model was the most accurate. The models were used to estimate lime requirements for 303 African soil samples. We found large differences in the estimated lime rates depending on the target soil chemical property of the model. Therefore, an important first step in formulating liming recommendations is to clearly identify the soil property of interest and the target value that needs to be reached. While the LiTAS model can be useful for strategic research, more information on acidity-related problems other than aluminum toxicity is needed to comprehensively assess the benefits of liming

Direct Evidence of Endothelial Dysfunction and Glycocalyx Loss in Dermal Biopsies of Patients With Chronic Kidney Disease and Their Association With Markers of Volume Overload

Cardiovascular morbidity is a major problem in patients with chronic kidney disease (CKD) and endothelial dysfunction (ED) is involved in its development. The luminal side of the vascular endothelium is covered by a protective endothelial glycocalyx (eGC) and indirect evidence indicates eGC loss in CKD patients. We aimed to investigate potential eGC loss and ED in skin biopsies of CKD patients and their association with inflammation and volume overload. During living kidney transplantation procedure, abdominal skin biopsies were taken from 11 patients with chronic kidney disease stage 5 of whom 4 were treated with hemodialysis and 7 did not receive dialysis treatment. Nine healthy kidney donors served as controls. Biopsies were stained and quantified for the eGC marker Ulex europaeus agglutinin-1 (UEA1) and the endothelial markers vascular endothelial growth factor-2 (VEGFR2) and von Willebrand factor (vWF) after double staining and normalization for the pan-endothelial marker cluster of differentiation 31. We also studied associations between quantified log-transformed dermal endothelial markers and plasma markers of inflammation and hydration status. Compared to healthy subjects, there was severe loss of the eGC marker UEA1 (P < 0.01) while VEGFR2 was increased in CKD patients, especially in those on dialysis (P = 0.01). For vWF, results were comparable between CKD patients and controls. Skin water content was identical in the three groups, which excluded dermal edema as an underlying cause in patients with CKD. The dermal eGC/ED markers UEA1, VEGFR2, and vWF all associated with plasma levels of NT-proBNP and sodium (all R2 > 0.29 and P < 0.01), except for vWF that only associated with plasma NT-proBNP. This study is the first to show direct histopathological evidence of dermal glycocalyx loss and ED in patients with CKD. In line with previous research, our results show that ED associates with markers of volume overload arguing for strict volume control in CKD patients

Locating Pleistocene Refugia: Comparing Phylogeographic and Ecological Niche Model Predictions

Ecological niche models (ENMs) provide a means of characterizing the spatial distribution of suitable conditions for species, and have recently been applied to the challenge of locating potential distributional areas at the Last Glacial Maximum (LGM) when unfavorable climate conditions led to range contractions and fragmentation. Here, we compare and contrast ENM-based reconstructions of LGM refugial locations with those resulting from the more traditional molecular genetic and phylogeographic predictions. We examined 20 North American terrestrial vertebrate species from different regions and with different range sizes for which refugia have been identified based on phylogeographic analyses, using ENM tools to make parallel predictions. We then assessed the correspondence between the two approaches based on spatial overlap and areal extent of the predicted refugia. In 14 of the 20 species, the predictions from ENM and predictions based on phylogeographic studies were significantly spatially correlated, suggesting that the two approaches to development of refugial maps are converging on a similar result. Our results confirm that ENM scenario exploration can provide a useful complement to molecular studies, offering a less subjective, spatially explicit hypothesis of past geographic patterns of distribution