44 research outputs found

    Essays in empirical macroeconomics

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    This Dissertation is composed of two Chapters which can be read independently. Each Chapter consists of a self-contained empirical study of an economic issue from the field of macroeconomics. The first Chapter of this Dissertation is concerned with the transmission of monetary policy decisions to real economic activity. I show that US manufacturing industries react vastly different to monetary policy shocks. I use the heterogeneity in output responses to monetary policy shocks across industries to test whether industries with a higher degree of price stickiness react more strongly to monetary policy shocks, as predicted by New Keynesian models of the monetary transmission mechanism. The second Chapter of my Dissertation provides new evidence on the extent and the geography of intergenerational mobility in Germany. We show that intergenerational mobility, measured by the association of the educational attainment of children in secondary school and their parents income, differs substantially across regions within Germany

    Ranked retrieval of Computational Biology models

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    <p>Abstract</p> <p>Background</p> <p>The study of biological systems demands computational support. If targeting a biological problem, the reuse of existing computational models can save time and effort. Deciding for potentially suitable models, however, becomes more challenging with the increasing number of computational models available, and even more when considering the models' growing complexity. Firstly, among a set of potential model candidates it is difficult to decide for the model that best suits ones needs. Secondly, it is hard to grasp the nature of an unknown model listed in a search result set, and to judge how well it fits for the particular problem one has in mind.</p> <p>Results</p> <p>Here we present an improved search approach for computational models of biological processes. It is based on existing retrieval and ranking methods from Information Retrieval. The approach incorporates annotations suggested by MIRIAM, and additional meta-information. It is now part of the search engine of BioModels Database, a standard repository for computational models.</p> <p>Conclusions</p> <p>The introduced concept and implementation are, to our knowledge, the first application of Information Retrieval techniques on model search in Computational Systems Biology. Using the example of BioModels Database, it was shown that the approach is feasible and extends the current possibilities to search for relevant models. The advantages of our system over existing solutions are that we incorporate a rich set of meta-information, and that we provide the user with a relevance ranking of the models found for a query. Better search capabilities in model databases are expected to have a positive effect on the reuse of existing models.</p

    Evaluation der Berufseinstiegsbegleitung nach § 421s SGB III: Zwischenbericht 2011

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    Die Anforderungen an SchĂŒlerinnen und SchĂŒler zwei Jahre vor ihrem Schulabschluss sind hoch. Schulisch sind sie mit vielen PrĂŒfungen gefordert. Daneben mĂŒssen sie Bewerbungen fĂŒr AusbildungsplĂ€tze schreiben. Wenn es zum BewerbungsgesprĂ€ch kommt, stehen sie vor einer unbekannten Situation. Viele sind unsicher darĂŒber, wie es nach der Schule weitergeht. Das Berufsleben - spĂ€ter meist selbstverstĂ€ndlich - ist die große Unbekannte. In dieser Phase hilft die Berufseinstiegsbegleitung nach dem Arbeitsförderungsrecht derzeit in einer modellhaften Erprobung an rund 1.000 Schulen denjenigen, die besondere Schwierigkeiten beim Schulabschluss und beim Übergang in die berufliche Zukunft haben. Bisher wurden dabei rund 37.000 SchĂŒlerinnen und SchĂŒlern durch die Bundesagentur fĂŒr Arbeit gefördert. Die begleitende Wirkungsforschung (Evaluation) zeigt nun, dass sich bei den Teilnehmenden leichte Verbesserungen der Noten in Mathematik, Deutsch und Englisch zeigen. Von denjenigen, die die Schule „in Begleitung“ verlassen haben, haben 22,8 % eine betriebliche und 5,1 % eine schulische Berufsausbildung begonnen. Vergleichszahlen zu ÜbergĂ€ngen von der Schule in den Beruf von jungen Menschen "ohne entsprechende Begleitung" liegen noch nicht vor. Nach der Schule verteilen sich die SchĂŒlerinnen und SchĂŒler auf verschiedene Betriebe, Berufsschulen und andere Einrichtungen. FĂŒr die TĂ€tigkeit der Berufseinstiegsbegleiterinnen und -begleiter stellt dies eine rĂ€umliche und eine organisatorische Herausforderung dar. Denn die Berufseinstiegsbegleitung endet in der Berufsausbildung normalerweise erst nach sechs Monaten. Damit soll die kritische Anfangsphase, in der die meisten AbbrĂŒche stattfinden, stabilisiert werden. Die bisherigen positiven Erfahrungen mit der Berufseinstiegsbegleitung haben die Bundesregierung dazu veranlasst, im Entwurf eines Gesetzes zur Verbesserung der Eingliederungschancen am Arbeitsmarkt die Entfristung der Berufseinstiegsbegleitung vorzuschlagen. Der Deutsche Bundestag hat dieses Gesetz am 23. September 2011 verabschiedet

    Cell cycle independent role of cyclin D3 in host restriction of influenza virus infection

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    To identify new host factors that modulate the replication of influenza A virus, we performed a yeast two-hybrid screen using the cytoplasmic tail of matrix protein 2 from the highly pathogenic H5N1 strain. The screen revealed a high-score interaction with cyclin D3, a key regulator of cell cycle early G1 phase. M2-cyclin D3 interaction was validated through GST pull-down and recapitulated in influenza A/WSN/33-infected cells. Knockdown of Ccnd3 by small interfering RNA significantly enhanced virus progeny titers in cell culture supernatants. Interestingly, the increase in virus production was due to cyclin D3 deficiency per se, and not merely a consequence of cell cycle deregulation. A combined knockdown of Ccnd3 and Rb1, which rescued cell cycle progression into the S phase, failed to normalize virus production. Infection by IAV triggered redistribution of cyclin D3 from the nucleus to the cytoplasm followed by its proteasomal degradation. When over-expressed in HEK 293T cells cyclin D3 impaired binding of M2 with M1, which is essential for proper assembly of progeny virions, lending further support to its role as a putative restriction factor. Our study describes the identification and characterization of cyclin D3 as a novel interactor of influenza A virus M2 protein. We hypothesize that competitive inhibition of M1-M2 interaction by cyclin D3 impairs infectious virion formation and results in attenuated virus production. In addition, we provide mechanistic insights into the dynamic interplay of influenza virus with the host cell cycle machinery during infection.This work was supported by the Research Fund for the Control of Infectious Diseases (Grant RFCID 11101332) and the Area of Excellence Scheme of the University Grants Committee (Grant AoE/M-12/06) and partially supported by a grant from the Research Grants Council of the Hong Kong Special Administrative Region, China (Project No. T11-705/14N)

    Examining the generalizability of research findings from archival data

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    This initiative examined systematically the extent to which a large set of archival research findings generalizes across contexts. We repeated the key analyses for 29 original strategic management effects in the same context (direct reproduction) as well as in 52 novel time periods and geographies; 45% of the reproductions returned results matching the original reports together with 55% of tests in different spans of years and 40% of tests in novel geographies. Some original findings were associated with multiple new tests. Reproducibility was the best predictor of generalizability—for the findings that proved directly reproducible, 84% emerged in other available time periods and 57% emerged in other geographies. Overall, only limited empirical evidence emerged for context sensitivity. In a forecasting survey, independent scientists were able to anticipate which effects would find support in tests in new samples

    SBML Level 3: an extensible format for the exchange and reuse of biological models

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    Systems biology has experienced dramatic growth in the number, size, and complexity of computational models. To reproduce simulation results and reuse models, researchers must exchange unambiguous model descriptions. We review the latest edition of the Systems Biology Markup Language (SBML), a format designed for this purpose. A community of modelers and software authors developed SBML Level 3 over the past decade. Its modular form consists of a core suited to representing reaction-based models and packages that extend the core with features suited to other model types including constraint-based models, reaction-diffusion models, logical network models, and rule-based models. The format leverages two decades of SBML and a rich software ecosystem that transformed how systems biologists build and interact with models. More recently, the rise of multiscale models of whole cells and organs, and new data sources such as single-cell measurements and live imaging, has precipitated new ways of integrating data with models. We provide our perspectives on the challenges presented by these developments and how SBML Level 3 provides the foundation needed to support this evolution

    Essays in empirical macroeconomics

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    This Dissertation is composed of two Chapters which can be read independently. Each Chapter consists of a self-contained empirical study of an economic issue from the field of macroeconomics. The first Chapter of this Dissertation is concerned with the transmission of monetary policy decisions to real economic activity. I show that US manufacturing industries react vastly different to monetary policy shocks. I use the heterogeneity in output responses to monetary policy shocks across industries to test whether industries with a higher degree of price stickiness react more strongly to monetary policy shocks, as predicted by New Keynesian models of the monetary transmission mechanism. The second Chapter of my Dissertation provides new evidence on the extent and the geography of intergenerational mobility in Germany. We show that intergenerational mobility, measured by the association of the educational attainment of children in secondary school and their parents income, differs substantially across regions within Germany

    Tourism in the conflict of culture and commerce : How is tourism organized in Raja-sthan?

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    Social Mobility in Germany

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    We characterize intergenerational mobility in Germany using census data on educational attainment and parental income for 526,000 children. Our measure of educational attainment is the A-Level degree, a requirement for access to university. A 10 percentile increase in the parental income rank is associated with a 5.2 percentage point increase in the A-Level share. This parental income gradient has not changed for the birth cohorts of 1980-1996, despite a large-scale policy of expanding upper secondary education. At the regional level, there exists substantialvariation in mobility estimates. Place effects, rather than sorting of households, account for most of these difference

    Searching BioModels Database

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    *Aim*&#xd;&#xa;&#xd;&#xa;The increasing number of computational models of biological systems demands a better support for search facilities. One possible improvement is to enable ranked retrieval of models based on existing model annotation. &#xd;&#xa;&#xa0;&#xd;&#xa;Applying existing Information Retrieval (IR) techniques to computational models, we have implemented a new search strategy in BioModels Database. In this search strategy the index of search terms contains not only the model descriptions in the database, but is expanded by including ontological and textual information about a model and its constituents retrieved from external sources. To add more background knowledge, we additionally index the abstracts of the reference publications. &#xd;&#xa;&#xa0;&#xd;&#xa;*Results*&#xd;&#xa;&#xa0;&#xd;&#xa;The new search system was integrated into BioModels Database and is based on a Lucene implementation. The model index includes 454 models and 154854 terms, the semantic index 2353 constituents and 437244 terms. Different sources are incorporated in the retrieval and ranking process, the most important of them via MIRIAM annotations to models and model constituents.&#xd;&#xa;&#xd;&#xa;The search results are sorted with regard to different aspects, i.e. model authors, dates, constituents, or SBML elements. Several state-of-the-art information retrieval features are supported, such as fuzzy, proximity or range search. As a result the user is enabled to specify the criteria relevant for a search, and is provided with a ranked result set of relevant models. &#xd;&#xa;&#xa0;&#xd;&#xa;The search was implemented in the demo version of BioModels Database and is available at http://www.ebi.ac.uk/biomodels-demo/. &#xd;&#xa;A detailed description of the technical realisation is given in:&#xd;&#xa;[Henkel et al., 2010]: Henkel, R., Endler, L., Peters, A., Novere, N., and Waltemath, D. (2010). Ranked retrieval of computational biology models. BMC Bioinformatics, 11(1):423+.&#xd;&#xa;. &#xd;&#xa
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