The variation and visualisation of elastic anisotropy in rock forming minerals

Acknowledgements David Healy thanks John Wheeler (Liverpool) for discussions and Ross Angel (Padua) for discussions and a reprint. This paper is dedicated to the memory of John Frederick Nye (1923–2019), whose seminal text book, first published in 1957 (Physical Properties of Crystals: Their Representation by Tensors and Matrices; reprinted as Nye, 1985), has had a huge influence on the lead author. Financial support This research has been supported by the NERC (grant no. NE/N003063/1).Peer reviewedPublisher PD

Evidence for variable selective pressures at MC1R

It is widely assumed that genes that influence variation in skin and hair pigmentation are under selection. To date,the melanocortin 1 receptor (MC1R) is the only gene identified that explains substantial phenotypic variance inhuman pigmentation. Here we investigate MC1R polymorphism in several populations, for evidence of selection.We conclude that MC1R is under strong functional constraint in Africa, where any diversion from eumelanin production (black pigmentation) appears to be evolutionarily deleterious. Although many of the MC1R amino acid variants observed in non-African populations do affect MC1R function and contribute to high levels of MC1R diversity in Europeans, we found no evidence, in either the magnitude or the patterns of diversity, for its enhancement by selection; rather, our analyses show that levels of MC1R polymorphism simply reflect neutral expectations underrelaxation of strong functional constraint outside Africa

Microbial Diversity Aboard Spacecraft: Evaluation of the International Space Station

An evaluation of the microbial flora from air, water, and surface samples provided a baseline of microbial diversity onboard the International Space Station (ISS) to gain insight into bacterial and fungal contamination during the initial stages of construction and habitation. Using 16S genetic sequencing and rep-PeR, 63 bacterial strains were isolated for identification and fingerprinted for microbial tracking. The use of these molecular tools allowed for the identification of bacteria not previously identified using automated biochemical analysis and provided a clear indication of the source of several ISS contaminants. Fungal and bacterial data acquired during monitoring do not suggest there is a current microbial hazard to the spacecraft, nor does any trend indicate a potential health risk. Previous spacecraft environmental analysis indicated that microbial contamination will increase with time and require continued surveillance

Modeling the source of GW150914 with targeted numerical-relativity simulations

In fall of 2015, the two LIGO detectors measured the gravitational wave signal GW150914, which originated from a pair of merging black holes. In the final 0.2 seconds (about 8 gravitational-wave cycles) before the amplitude reached its maximum, the observed signal swept up in amplitude and frequency, from 35 Hz to 150 Hz. The theoretical gravitational-wave signal for merging black holes, as predicted by general relativity, can be computed only by full numerical relativity, because analytic approximations fail near the time of merger. Moreover, the nearly-equal masses, moderate spins, and small number of orbits of GW150914 are especially straightforward and efficient to simulate with modern numerical-relativity codes. In this paper, we report the modeling of GW150914 with numerical-relativity simulations, using black-hole masses and spins consistent with those inferred from LIGO's measurement. In particular, we employ two independent numerical-relativity codes that use completely different analytical and numerical methods to model the same merging black holes and to compute the emitted gravitational waveform; we find excellent agreement between the waveforms produced by the two independent codes. These results demonstrate the validity, impact, and potential of current and future studies using rapid-response, targeted numerical-relativity simulations for better understanding gravitational-wave observations.Comment: 11 pages, 3 figures, submitted to Classical and Quantum Gravit

Use of industrial by-products and natural media to adsorb nutrients, metals and organic carbon from drinking water

• The use of waste media in the water sector results in a robust, sustainable option. • Fly ash and Bayer residue successfully adsorb TOC, nutrients and Cu. • Granular blast furnace slag and pyritic fill have good adsorption potential. • pH adjustment is not necessary for optimal adsorption of contaminants. • Kinetic studies show that at least 60% of adsorption had taken place after 8 h. a b s t r a c t a r t i c l e i n f o Filtration technology is well established in the water sector but is limited by inability to remove targeted contaminants, found in surface and groundwater, which can be damaging to human health. This study optimises the design of filters by examining the efficacy of seven media (fly ash, bottom ash, Bayer residue, granular blast furnace slag (GBS), pyritic fill, granular activated carbon (GAC) and zeolite), to adsorb nitrate, ammonium, total organic carbon (TOC), aluminium, copper (Cu) and phosphorus. Each medium and contaminant was modelled to a Langmuir, Freundlich or Temkin adsorption isotherm, and the impact of pH and temperature (ranging from 10°C to 29°C) on their performance was quantified. As retention time within water filters is important in contaminant removal, kinetic studies were carried out to observe the adsorption behaviour over a 24 h period. Fly ash and Bayer residue had good TOC, nutrient and Cu adsorption capacity. Granular blast furnace slag and pyritic fill, previously un-investigated in water treatment, showed adsorption potential for all contaminants. In general, pH or temperature adjustment was not necessary to achieve effective adsorption. Kinetic studies showed that at least 60% of adsorption had occurred after 8 h for all media. These media show potential for use in a multifunctional water treatment unit for the targeted treatment of specific contaminants

Learning and animal movement

Authors acknowledge the following grants for supporting this research: NSERC Discovery (ML and MA-M), NSF DMS-1853465 (WF and EG), and Canada Research Chairs Program (ML and MA-M).Integrating diverse concepts from animal behavior, movement ecology, and machine learning, we develop an overview of the ecology of learning and animal movement. Learning-based movement is clearly relevant to ecological problems, but the subject is rooted firmly in psychology, including a distinct terminology. We contrast this psychological origin of learning with the task-oriented perspective on learning that has emerged from the field of machine learning. We review conceptual frameworks that characterize the role of learning in movement, discuss emerging trends, and summarize recent developments in the analysis of movement data. We also discuss the relative advantages of different modeling approaches for exploring the learning-movement interface. We explore in depth how individual and social modalities of learning can matter to the ecology of animal movement, and highlight how diverse kinds of field studies, ranging from translocation efforts to manipulative experiments, can provide critical insight into the learning process in animal movement.Publisher PDFPeer reviewe

Wild hummingbirds can use the geometry of a flower array

This research was supported in part by ASAB to SDH, and a Natural Sciences and Engineering Research Council of Canada Discovery Grant to TAH.Animals use cues from their environment to orient in space and to navigate their surroundings. Geometry is a cue whose informational content may originate from the metric properties of a given environment, and its use has been demonstrated in the laboratory in nearly every species of animal tested. However, it is not clear whether geometric information, used by animals typically tested in small, rectangular boxes, is directly relevant to animals in their natural environment. Here we present the first data that confirm the use of geometric cues by a free-living animal in the wild. We trained rufous hummingbirds to visit a rectangular array of four artificial flowers, one of which was rewarded. In some trials a conspicuous landmark cued the reward. Following array translocation and rotation, we presented hummingbirds with three tests. When trained and tested with the landmark, or when trained and tested without it, hummingbirds failed to show geometric learning. However, when trained with a landmark but tested without it, hummingbirds produced the classic geometric response, showing that they had learned the geometric relationships (distance and direction) of several non-reward visual elements of the environment. While it remains that the use of geometry to relocate a reward may be an experimental artefact, it is one cue that is not confined to the laboratory.PostprintPeer reviewe

A VLA Search for Water Masers in Six HII Regions: Tracers of Triggered Low-Mass Star Formation

We present a search for water maser emission at 22 GHz associated with young low-mass protostars in six HII regions -- M16, M20, NGC 2264, NGC 6357, S125, and S140. The survey was conducted with the NRAO Very Large Array from 2000 to 2002. For several of these HII regions, ours are the first high-resolution observations of water masers. We detected 16 water masers: eight in M16, four in M20, three in S140, and one in NGC 2264. All but one of these were previously undetected. No maser emission was detected from NGC 6357 or S125. There are two principle results to our study. (1) The distribution of water masers in M16 and M20 does not appear to be random but instead is concentrated in a layer of compressed gas within a few tenths of a parsec of the ionization front. (2) Significantly fewer masers are seen in the observed fields than expected based on other indications of ongoing star formation, indicating that the maser-exciting lifetime of protostars is much shorter in HII regions than in regions of isolated star formation. Both of these results confirm predictions of a scenario in which star formation is first triggered by shocks driven in advance of ionization fronts, and then truncated approximately 10^5 years later when the region is overrun by the ionization front.Comment: 30 pages, 20 figures, 3 tables. Accepted for publication by ApJ. Full resolution figures and PS and PDF versions with full-res figures available at http://eagle.la.asu.edu/healy/preprints/hhc0

Melanocortin 1 Receptor Variants in an Irish Population

The identification of an association between variants in the human melanocortin 1 receptor (MC1R) gene and red hair and fair skin, as well as the relation between variants of this gene and coat color in animals, suggests that the MC1R is an integral control point in the normal pigmentation phenotype. In order to further define the contribution of MC1R variants to pigmentation in a normal population, we have looked for alterations in this gene in series of individuals from a general Irish population, in whom there is a preponderance of individuals with fair skin type. Seventy-five per cent contained a variant in the MC1R gene, with 30% containing two variants. The Arg151Cys, Arg160Trp, and Asp294His variants were significantly associated with red hair (p = 0.0015, p < 0.001, and p < 0.005, respectively). Importantly, no individuals harboring two of these three variants did not have red hair, although some red-haired individuals only showed one alteration. The same three variants were also over-represented in individuals with light skin type as assessed using a modified Fitzpatrick scale. Despite these associations many subjects with dark hair/darker skin type harbored MC1R variants, but there was no evidence of any particular association of variants with the darker phenotype. The Asp294His variant was similarly associated with red hair in a Dutch population, but was infrequent in red-headed subjects from Sweden. The Asp294His variant was also significantly associated with nonmelanoma skin cancer in a U.K. population. The results show that the Arg151Cys, Arg160Trp, and Asp294His variants are of key significance in determining the pigmentary phenotype and response to ultraviolet radiation, and suggest that in many cases the red-haired component and in some cases fair skin type are inherited as a Mendelian recessive