On some fundamental results about higher-rank graphs and their C*-algebras

Results of Fowler and Sims show that every k-graph is completely determined by its k-coloured skeleton and collection of commuting squares. Here we give an explicit description of the k-graph associated to a given skeleton and collection of squares and show that two k-graphs are isomorphic if and only if there is an isomorphism of their skeletons which preserves commuting squares. We use this to prove directly that each k-graph {\Lambda} is isomorphic to the quotient of the path category of its skeleton by the equivalence relation determined by the commuting squares, and show that this extends to a homeomorphism of infinite-path spaces when the k-graph is row finite with no sources. We conclude with a short direct proof of the characterisation, originally due to Robertson and Sims, of simplicity of the C*-algebra of a row-finite k-graph with no sources.Comment: 21 pages, two pictures prepared using TiK

High-Resolution, Real-Space Imaging of Conformational Structures of Poly-L-Proline Helixes

In 1954, Edsall postulated that the imino-acid proline, which is a frequently found constituent of protein molecules, is a key determinant to the three-dimensional architecture of proteins. It not only should play a fundamental role in stabilizing helical structures of polypeptides, it should allow for sharp bends and even for a complete reversal of the direction of a helix looping back on itself. No direct evidence has yet been published to prove this prediction. Using scanning tunneling microscopy, we have presented high-resolution, real-space images of two conformations of poly-L-proline, where one structure clearly exhibits the predicted 180° back-folding behavior. The measured length, 1.89 nm, of the repeating unit cells agrees with available X-ray data for poly-L-proline I with cis-peptide bonds. We further observe aggregated poly-L-proline II, consisting of highly-ordered, periodically and parallel-linked trans-peptide chains which are 2.4 nm apart from each other. Stacking of these aggregates with their orientation rotated by 90° is also observed

Offspring production with cryopreserved sperm from a live-bearing fish Xiphophorus maculatus and implications for female fecundity

Xiphophorus fishes are well-established models for biomedical research of spontaneous or induced tumors, and their use in research dates back to the 1930s. Currently, 58 well-pedigreed lines exist among 24 Xiphophorus species housed as live animals at the Xiphophorus Genetic Stock Center. The technique of sperm cryopreservation has been applied to preserve these valuable genetic resources, and production of offspring has been reported with cryopreserved sperm in two species (X. helleri and X. couchianus). The goal of this research was to establish protocols for sperm cryopreservation and artificial insemination that yield live young in X. maculatus, a widely used research species. The objectives were to: 1) collect basic biological characteristics of males, and quantify the sperm production yield after crushing of dissected testis; 2) cryopreserve sperm from X. maculatus by adapting as necessary the protocols for sperm cryopreservation of X. helleri and X. couchianus; 3) use cryopreserved sperm to inseminate virgin females of X maculatus and other species (X. helleri and X. couchianus), and 4) compare experimental trials over a 3-year period to identify opportunities for improving female fecundity. In total, 117 males were used in this study with a standard length of 2.5 ± 0.3 cm (mean ± SD), body weight of 0.474 ± 0.149 g, and dissected testis weight of 7.1 ± 3.7 mg. Calculation of sperm availability showed 5.9 ± 2.8 × 106 sperm cells per mg of testis weight. Offspring were produced from cryopreserved sperm. Male-to-male variation (1-70%) was observed in post-thaw motility despite little variation in motility before freezing (60-90%) or genetic variation (~ 100 generations of sib-mating). Comparisons of biological factors of males did not have significant correlations with the production of live young, and the influence of females on production of young was identified from the comparison of artificial insemination over 3 years. Overall, this study describes offspring production from cryopreserved sperm in a third species of Xiphophorus fishes, and identifies the opportunities for improving female fecundity which is essential for establishment of germplasm repositories for Xiphophorus fishes. © 2011 Elsevier Inc. All rights reserved

Assessing Cognitive Abilities in High-Performing Cochlear Implant Users

Despite being considered one of the most successful neural prostheses, cochlear implants (CIs) provide recipients with a wide range of speech perception performance. While some CI users can understand speech in the absence of visual cues, other recipients exhibit more limited speech perception. Cognitive skills have been documented as a contributor to complex auditory processing, such as language understanding; however, there are no normative data for existing standardized clinical tests assessing cognitive abilities in CI users. Here, we assess the impact of modality of presentation (i.e., auditory-visual versus visual) for the administration of working memory tests in high-performing CI users in addition to measuring processing speed, cognitive efficiency and intelligence quotient (IQ). Second, we relate performance on these cognitive measures to clinical CI speech perception outcomes.Methods: Twenty one post-lingually deafened, high-performing, adult CI users [age range: 52–88 years; 3 unilateral CI, 13 bimodal (i.e., CI with contralateral hearing aid), 5 bilateral CI] with clinical speech perception scores (i.e., AzBio sentences in quiet for the first-ear CI) of ≥60% were recruited. A cognitive test battery assessing auditory-visual working memory (AVWM), visual working memory (VWM), processing speed, cognitive efficiency and IQ was administered, in addition to clinical measures of speech perception in quiet (i.e., AzBio sentences in quiet). AzBio sentences were assessed in two conditions: first-ear CI only, and best-aided everyday wearing condition. Subjects also provided self-reported measures of performance and benefit from their CI using standardized materials, including the Glasgow Benefit Inventory (GBI) and the Nijmegen Cochlear Implant questionnaire (NCIQ).Results: High-performing CI users demonstrated greater VWM than AVWM recall. VWM was positively related to AzBio scores when measured in the first-ear CI only. AVWM, processing speed, cognitive efficiency, and IQ did not relate to either measure of speech perception (i.e., first-ear CI or best-aided conditions). Subjects’ self-reported benefit as measured by the GBI predicted best-aided CI speech perception performance.Conclusion: In high-performing CI recipients, visual presentation of working memory tests may improve our assessment of cognitive function

Effect of Ruminally-Protected Lysine Supplementation to Growing Cattle on Growth and Subsequent Finishing Performance

Objective: The objective of this study was to evaluate the effects of ruminally-protected lysine supplementation fed during the growing phase to cattle limit-fed a corn-based diet, and to evaluate the subsequent finishing performance. Study Description: For 77 days, a group of 338 steers limit-fed at 2.4% of body weight daily on a dry matter basis were allocated to treatments providing 0, 3, or 6 g/day of lysine from Smartamine ML (Adisseo, Alpharetta, GA), or containing blood meal plus ruminally-protected methionine from Smartamine M. Growth performance was measured over the growing period. Cattle were then shipped to a commercial feedlot and fed without treatment until slaughter. Finishing performance was gathered from carcass data. Results: Steers supplemented with 3 g/day of lysine appeared to have the greatest response during the growing phase, having the heaviest body weights on day 77, and greatest average daily gains and gain:feed ratios. In the finishing phase, cattle that received 3 g/day of lysine during the growing phase maintained the weight advantage, relative to the control, established during the growing phase. Cattle receiving 6 g/day of lysine during the growing phase performed best during the finishing phase. Cattle receiving 3 and 6 g/day of lysine during the growing phase had carcasses that were 8 and 16 lb greater, respectively, than the control. The Bottom Line: When fed corn-based diets, supplementation of ruminally-protected lysine during the growing phase may improve growth performance of cattle during the growing and/or finishing phase, leading to improvement in greater carcass weights