Marshall University Music Department Presents a Senior Recital, Nicholas Hartley, piano

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Nanomachine biocatalysts: Tools for cell-free artificial metabolic networks

Assembling cell-free, cascading multi-enzyme enzyme reactions into artificial metabolic networks for the conversion of low value renewable feedstocks into high value products represents a fourth wave of biocatalysis for renewable green chemistry and synthetic biology applications [1]. However, major limitations to both applications include the cost of producing multiple purified enzymes and of providing a continuous supply of diffusible cofactors or cosubstrates [2]. We have applied synthetic biology principles to produce fusion proteins between synthetic enzymes and their cofactor-recycling partner enzymes, with concomitant in situ recycling of a modified tethered cofactor, with an added conjugation protein element to allow immobilization of the nanomachines to a surface. This has enabled the construction of nanomachine flow reactors which can be combined in an interchangeable, “plug-and-play” manner to construct complex synthetic networks or Nanofactories. Synthesis of the anti-diabetic drug, D-fagomine, reductive amination to produce various chiral or conjugated amines (Fig. 1) and deracemization of alcohols have been used to exemplify the principles, and we have demonstrated tethered cofactor recycling of ATP, NAD(H)+ and NADP(H)+, as well as ligand-directed immobilization of a variety of enzymes to illustrate the use of these nanomachine biocatalysts as tools for the de novo construction of in vitro metabolic networks for synthetic biology. Our research is currently exploring the use of frugal innovation principles to integrate key capabilities in reactor design with on-line analytics for real-time reaction monitoring, and, subsequently, dynamic control over the platform’s fluidics via feedback loops. We aim to demonstrate the utility of such systems for cell-free metabolic engineering to enable fine chemical synthesis, with additional applications possible in bioremediation and environmental sensing. Please click Additional Files below to see the full abstract

Geology and Petroleum Prospectivity of the Sea of Hebrides Basin and Minch Basin, Offshore Northwest Scotland

Funding: This work was funded by the Natural Environment Research Council (RG12649-12). Acknowledgements: The work contained in this paper contains work conducted during a PhD study undertaken as part of the Natural Environment Research Council (NERC) Centre for Doctoral Training (CDT) in Oil and Gas. We are also grateful to IHS Markit for provision of, and permission to publish examples from, their 2D seismic data volumes and gravity and magnetics database, and to Schlumberger for their donation of Petrel seismic interpretation software licences to Aberdeen University. We also thank Geognostics for the kind permission to use the Frogtech Geoscience, 2016 depth to basement map (SEEBASE) of offshore northwest Scotland. We acknowledge the UKOilandGasData.com website, owned by UK National Data Repository administered by Schlumberger, for access to the seismic data volumes and released UK well database. We are also grateful to the UK National Onshore Data Library who kindly provided seismic data (UKOGL request 100891 and 100890) to the University of Aberdeen. Dr. Iain Scotchman and Dr. Clayton Grove are thanked for constructive and helpful reviews, which have improved this paper. Laura-Jane would also like to personally thank the late Professor Bernard Owens, who passed away in July 2019, for his informative discussion on Carboniferous outliers along the west coast early on in her PhD. The views held within this paper do not necessarily represent the views of IHS Markit.Peer reviewedPostprin

Biomass Blending and Densification: Impacts on Feedstock Supply and Biochemical Conversion Performance

The success of lignocellulosic biofuels and biochemical industries depends on an economic and reliable supply of high‐quality biomass. However, research and development efforts have been historically focused on the utilization of agriculturally derived cellulosic feedstocks, without considerations of their low energy density, high variations in compositions and potential supply risks in terms of availability and affordability. This chapter demonstrated a strategy of feedstock blending and densification to address the supply chain challenges. Blending takes advantage of low‐cost feedstock to avoid the prohibitive costs incurred through reliance on a single feedstock resource, while densification produces feedstocks with increased bulk density and desirable feed handling properties, as well as reduced transportation cost. We also review recent research on the blending and densification dealing with various types of feedstocks with a focus on the impacts of these preprocessing steps on biochemical conversion, that is, various thermochemical pretreatment chemistries and enzymatic hydrolysis, into fermentable sugars for biofuel production

Detection of changes in mitochondrial hydrogen sulfide (H2S) in vivo in the fish model Poecilia mexicana (Poeciliidae)

In this paper, we outline the use of a mitochondria-targeted ratiometric mass spectrometry probe, MitoA, to detect in vivo changes in mitochondrial hydrogen sulfide (H2S) in Poecilia mexicana (family Poeciliidae). MitoA is introduced via intraperitoneal injection into the animal and is taken up by mitochondria, where it reacts with H2S to form the product MitoN. The MitoN/MitoA ratio can be used to assess relative changes in the amounts of mitochondrial H2S produced over time. We describe the use of MitoA in the fish species P. mexicana to illustrate the steps for adopting the use of MitoA in a new organism, including extraction and purification of MitoA and MitoN from tissues followed by tandem mass spectrometry. In this proof-of-concept study we exposed H2S tolerant P. mexicana to 59 µM free H2S for 5 h, which resulted in increased MitoN/MitoA in brain and gills, but not in liver or muscle, demonstrating increased mitochondrial H2S levels in select tissues following whole-animal H2S exposure. This is the first time that accumulation of H2S has been observed in vivo during whole-animal exposure to free H2S using MitoA

Van Allen probes observations of a three-dimensional field line resonance at a plasmaspheric plume

Funding: JKS, KRM, and IJR acknowledge support from NERC Grants NE/P017185/2, NE/V002554/2, and STFC Grants ST/V006320/1, ST/X001008/1. DPH acknowledges NASA Grant 80NSSC20K1324. ANW was funded in part by STFC Grant ST/W001195/1. AWS was supported by NERC Independent Research Fellowship NE/W009129/1.Field Line Resonances (FLRs) are a critical component in Earth's magnetospheric dynamics, associated with the transfer of energy between Ultra Low Frequency waves and local plasma populations. In this study we investigate how the polarisation of FLRs are impacted by cold plasma density distributions during geomagnetic storms. We present an analysis of Van Allen Probe A observations, where the spacecraft traversed a storm time plasmaspheric plume. We show that the polarisation of the FLR is significantly altered at the sharp azimuthal density gradient of the plume boundary, where the polarisation is intermediate with significant poloidal and toroidal components. These signatures are consistent with magnetohydrodynamic modeling results, providing the first observational evidence of a 3D FLR associated with a plume in Earth's magnetosphere. These results demonstrate the importance of cold plasma in controlling wave dynamics in the magnetosphere, and have important implications for wave-particle interactions at a range of energies.Publisher PDFPeer reviewe

Escaping the perfect storm of simultaneous climate change impacts on agriculture and marine fisheries

The availability and production of food is threatened by climate change, with subsequent implications for food security and the global economy. In this study we assessed how the impacts of climate change on agriculture and marine fisheries interact under a range of scenarios. The 'business-as-usual' scenario would lead to ~90% of the global population, particularly in least developed countries, being exposed to declines in the productivity of both sectors, and < 3% of the world would experience productivity gains in both sectors. With strong mitigation equivalent to meeting Paris Agreement commitments, most countries including both the most vulnerable and the largest carbon emitters would show net gains in both agricultural and fisheries sectors

Leishmaniavirus-dependent metastatic leishmaniasis is prevented by blocking IL-17A

Cutaneous leishmaniasis has various outcomes, ranging from self-healing reddened papules to extensive open ulcerations that metastasise to secondary sites and are often resistant to standard therapies. In the case of L. guyanensis (L.g), about 5-10% of all infections result in metastatic complications. We recently showed that a cytoplasmic virus within L.g parasites (LRV1) is able to act as a potent innate immunogen, worsening disease outcome in a murine model. In this study, we investigated the immunophenotype of human patients infected by L.g and found a significant association between the inflammatory cytokine IL-17A, the presence of LRV1 and disease chronicity. Further, IL-17A was inversely correlated to the protective cytokine IFN-γ. These findings were experimentally corroborated in our murine model, where IL-17A produced in LRV1+ L.g infection contributed to parasite virulence and dissemination in the absence of IFN-γ. Additionally, IL-17A inhibition in mice using digoxin or SR1001, showed therapeutic promise in limiting parasite virulence. Thus, this murine model of LRV1-dependent infectious metastasis validated markers of disease chronicity in humans and elucidated the immunologic mechanism for the dissemination of Leishmania parasites to secondary sites. Moreover, it confirms the prognostic value of LRV1 and IL-17A detection to prevent metastatic leishmaniasis in human patients