29 research outputs found

    Finishing the euchromatic sequence of the human genome

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    The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

    Measurement of sediment deposition rates using an optical backscatter sensor

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    An optical method for measuring siltation of sediment has been developed using an optical fibre backscatter (OBS) nephelometer. Sediment settling upon the optical fibre sensor causes an increase in the backscatter reading which can be related to the settled sediment surface density (SSSD) as measured in units of mg cm−2. Calibration and laboratory tests indicate that the resolution of measurements of SSSD is 0·01 mg cm−2and an accuracy of 5% in still water. In moving water it is more difficult to determine the accuracy of the method because other methods with suitable resolution are unavailable. However, indirect methods using measurements of changing suspended sediment concentration in a ring flume, indicate that the OBS method under-predicts deposition. The series of siltation from three field sites are presented. This sensor offers considerable advances over other methods of measuring settling because time series of settling may be taken and thus settling events may be related to other hydrodynamic parameters such as wave climate and currents
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