Late inception of a resiliently oxygenated upper ocean

This is the author accepted manuscript. The final version is available from American Association for the Advancement of Science via the DOI in this record Rising oceanic and atmospheric oxygen levels through time have been crucial to enhanced habitability of surface Earth environments. Few redox proxies can track secular variations in dissolved oxygen concentrations around threshold levels for metazoan survival in the upper ocean. We present an extensive compilation of iodine-to-calcium ratios (I/Ca) in marine carbonates. Our record supports a major rise in the partial pressure of oxygen in the atmosphere at ~400 million years (Ma) ago and reveals a step change in the oxygenation of the upper ocean to relatively sustainable near-modern conditions at ~200 Ma ago. An Earth system model demonstrates that a shift in organic matter remineralization to greater depths, which may have been due to increasing size and biomineralization of eukaryotic plankton, likely drove the I/Ca signals at ~200 Ma ago.NER

Otitis Media in a New Mouse Model for CHARGE Syndrome with a Deletion in the Chd7 Gene

Otitis media is a middle ear disease common in children under three years old. Otitis media can occur in normal individuals with no other symptoms or syndromes, but it is often seen in individuals clinically diagnosed with genetic diseases such as CHARGE syndrome, a complex genetic disease caused by mutation in the Chd7 gene and characterized by multiple birth defects. Although otitis media is common in human CHARGE syndrome patients, it has not been reported in mouse models of CHARGE syndrome. In this study, we report a mouse model with a spontaneous deletion mutation in the Chd7 gene and with chronic otitis media of early onset age accompanied by hearing loss. These mice also exhibit morphological alteration in the Eustachian tubes, dysregulation of epithelial proliferation, and decreased density of middle ear cilia. Gene expression profiling revealed up-regulation of Muc5ac, Muc5b and Tgf-β1 transcripts, the products of which are involved in mucin production and TGF pathway regulation. This is the first mouse model of CHARGE syndrome reported to show otitis media with effusion and it will be valuable for studying the etiology of otitis media and other symptoms in CHARGE syndrome

Earth: Atmospheric Evolution of a Habitable Planet

Our present-day atmosphere is often used as an analog for potentially habitable exoplanets, but Earth's atmosphere has changed dramatically throughout its 4.5 billion year history. For example, molecular oxygen is abundant in the atmosphere today but was absent on the early Earth. Meanwhile, the physical and chemical evolution of Earth's atmosphere has also resulted in major swings in surface temperature, at times resulting in extreme glaciation or warm greenhouse climates. Despite this dynamic and occasionally dramatic history, the Earth has been persistently habitable--and, in fact, inhabited--for roughly 4 billion years. Understanding Earth's momentous changes and its enduring habitability is essential as a guide to the diversity of habitable planetary environments that may exist beyond our solar system and for ultimately recognizing spectroscopic fingerprints of life elsewhere in the Universe. Here, we review long-term trends in the composition of Earth's atmosphere as it relates to both planetary habitability and inhabitation. We focus on gases that may serve as habitability markers (CO2, N2) or biosignatures (CH4, O2), especially as related to the redox evolution of the atmosphere and the coupled evolution of Earth's climate system. We emphasize that in the search for Earth-like planets we must be mindful that the example provided by the modern atmosphere merely represents a single snapshot of Earth's long-term evolution. In exploring the many former states of our own planet, we emphasize Earth's atmospheric evolution during the Archean, Proterozoic, and Phanerozoic eons, but we conclude with a brief discussion of potential atmospheric trajectories into the distant future, many millions to billions of years from now. All of these 'Alternative Earth' scenarios provide insight to the potential diversity of Earth-like, habitable, and inhabited worlds.Comment: 34 pages, 4 figures, 4 tables. Review chapter to appear in Handbook of Exoplanet

Clinical outcome and costs of care in radioiodine treatment of hyperthyroidism

link_to_subscribed_fulltex

Patterns of local and global redox variability during the Cenomanian–Turonian Boundary Event (Oceanic Anoxic Event 2) recorded in carbonates and shales from central Italy

Careful evaluation of the local geochemical conditions in past marine settings can provide a window to the average redox state of the global ocean during episodes of extensive organic-carbon deposition. These comparisons aid in identifying the interplay between climate and biotic feedbacks contributing to and resulting from these events. Well-documented examples are known from the Mesozoic Era, which is characterized by episodes of widespread organic-carbon deposition known as Oceanic Anoxic Events (OAEs). This organic-carbon burial typically leads to coeval positive carbon-isotope excursions. Geochemical data are presented here for several palaeoredox proxies (Cr/Ti, V, Mo, Zn, Mn, Fe speciation, I/Ca and sulfur isotopes) from a section exposed at Furlo in the Marche–Umbrian Apennines of Italy that spans the Cenomanian-Turonian boundary. Here, OAE 2 is represented by a ~1-m thick radiolarian-rich millimetre-laminated organic-rich shale known locally as the Bonarelli Level. Iron speciation data for thin organic-rich intervals observed below the Bonarelli Level imply a local redox shift going into the OAE, with ferruginous conditions (i.e., anoxic with dissolved ferrous iron) transiently developed prior to the event and euxinia (i.e., anoxic and sulfidic bottom waters) throughout the event itself. Pre-OAE enrichments of elements sensitive to anoxic water columns were due to initial development of locally ferruginous bottom waters as a precursor to the event. However, the greater global expanse of dysoxic to euxinic conditions during the OAE greatly reduced redox-sensitive trace-metal concentrations in seawater. Carbonate I/Ca ratios were generally low, suggesting locally reduced bottom water oxygen conditions preceding the event and relatively increased O2 concentrations post-event. Combined, the Furlo geochemical data suggest a redox-stratified water column with oxic surface waters and a shallow chemocline overlying locally ferruginous bottom waters preceding the event, globally widespread euxinic bottom waters during the OAE, followed by chemocline shallowing but sustained local redox stratification following the event

Patterns of local and global redox variability during the Cenomanian–Turonian Boundary Event (Oceanic Anoxic Event 2) recorded in carbonates and shales from central Italy

Careful evaluation of the local geochemical conditions in past marine settings can provide a window to the average redox state of the global ocean during episodes of extensive organic-carbon deposition. These comparisons aid in identifying the interplay between climate and biotic feedbacks contributing to and resulting from these events. Well-documented examples are known from the Mesozoic Era, which is characterized by episodes of widespread organic-carbon deposition known as Oceanic Anoxic Events (OAEs). This organic-carbon burial typically leads to coeval positive carbon-isotope excursions. Geochemical data are presented here for several palaeoredox proxies (Cr/Ti, V, Mo, Zn, Mn, Fe speciation, I/Ca and sulfur isotopes) from a section exposed at Furlo in the Marche–Umbrian Apennines of Italy that spans the Cenomanian-Turonian boundary. Here, OAE 2 is represented by a ~1-m thick radiolarian-rich millimetre-laminated organic-rich shale known locally as the Bonarelli Level. Iron speciation data for thin organic-rich intervals observed below the Bonarelli Level imply a local redox shift going into the OAE, with ferruginous conditions (i.e., anoxic with dissolved ferrous iron) transiently developed prior to the event and euxinia (i.e., anoxic and sulfidic bottom waters) throughout the event itself. Pre-OAE enrichments of elements sensitive to anoxic water columns were due to initial development of locally ferruginous bottom waters as a precursor to the event. However, the greater global expanse of dysoxic to euxinic conditions during the OAE greatly reduced redox-sensitive trace-metal concentrations in seawater. Carbonate I/Ca ratios were generally low, suggesting locally reduced bottom water oxygen conditions preceding the event and relatively increased O2 concentrations post-event. Combined, the Furlo geochemical data suggest a redox-stratified water column with oxic surface waters and a shallow chemocline overlying locally ferruginous bottom waters preceding the event, globally widespread euxinic bottom waters during the OAE, followed by chemocline shallowing but sustained local redox stratification following the event

The iron paleoredox proxies: A guide to the pitfalls, problems and proper practice

Oceanic anoxia—including euxinic settings defined by the presence of water column hydrogen sulfide (H2S)—is minor in the ocean today. Such conditions, however, were common or even dominant in the past, particularly during the Precambrian and Phanerozoic oceanic anoxic events. The latter are associated with massive petroleum and mineral reserves and many of the major extinction events in the paleontological record. Our ability to recognize ancient oxygen deficiencies relies strongly on paleontological data viewed in combination with geochemical tracers, and geochemistry is typically our only window onto ancient marine redox during the Precambrian when diagnostic skeletal and behaviorial traces of oxygen-dependent animals are mostly missing. So far no approach has gained wider acceptance than the iron proxies, which rely generally on quantification of the extent to which reactive iron (as oxides principally) is converted to pyrite. The promise of these approaches lies in part with the relative ease of measurement, but it is this ease and the corresponding widespread use that has also led to misuses. Much of the recent confidence in the iron paleoredox proxies lies with sophisticated deconstruction of the reactive Fe pool via mineral-calibrated wet chemical speciation. These validations and calibrations, mostly in the modern ocean, expose the challenges, while at the same time opening other doors of opportunity as the catalog of controlling factors extends beyond water column redox to include sedimentation rate, sedimentary Fe remobilization, signals of oscillatory redox, and hydrothermal versus other primary Fe inputs to the ocean, among other factors. Also key is a deep understanding of the limitations imposed—or at least the due diligence required—as linked to mineral transformations during burial and metamorphism. This review seeks to highlight many of the key issues, including appropriate sample choices, as a roadmap for those keen to apply Fe proxies in their studies of ancient oceans and their relationships to co-evolving life. Among the critical messages to take away is the value of robust Fe-based measures of local redox that, when combined with elemental mass balances and isotopic proxies dependent on those local conditions, can shed light on the global redox state of the oceans through time and related implications for the history of life on Earth

Evolution of circadian organization in vertebrates

Circadian organization means the way in which the entire circadian system above the cellular level is put together physically and the principles and rules that determine the interactions among its component parts which produce overt rhythms of physiology and behavior. Understanding this organization and its evolution is of practical importance as well as of basic interest. The first major problem that we face is the difficulty of making sense of the apparently great diversity that we observe in circadian organization of diverse vertebrates. Some of this diversity falls neatly into place along phylogenetic lines leading to firm generalizations: i) in all vertebrates there is a "circadian axis" consisting of the retinas, the pineal gland and the suprachiasmatic nucleus (SCN), ii) in many non-mammalian vertebrates of all classes (but not in any mammals) the pineal gland is both a photoreceptor and a circadian oscillator, and iii) in all non-mammalian vertebrates (but not in any mammals) there are extraretinal (and extrapineal) circadian photoreceptors. An interesting explanation of some of these facts, especially the differences between mammals and other vertebrates, can be constructed on the assumption that early in their evolution mammals passed through a "nocturnal bottleneck". On the other hand, a good deal of the diversity among the circadian systems of vertebrates does not fall neatly into place along phylogenetic lines. In the present review we will consider how we might better understand such "phylogenetically incoherent" diversity and what sorts of new information may help to further our understanding of the evolution of circadian organization in vertebrate