Ab initio Calculations of Multilayer Relaxations of Stepped Cu Surfaces

We present trends in the multilayer relaxations of several vicinals of Cu(100) and Cu(111) of varying terrace widths and geometry. The electronic structure calculations are based on density functional theory in the local density approximation with norm-conserving, non-local pseudopotentials in the mixed basis representation. While relaxations continue for several layers, the major effect concentrates near the step and corner atoms. On all surfaces the step atoms contract inwards, in agreement with experimental findings. Additionally, the corner atoms move outwards and the atoms in the adjacent chain undergo large inward relaxation. Correspondingly, the largest contraction (4%) is in the bond length between the step atom and its bulk nearest neighbor (BNN), while that between the corner atom and BNN is somewhat enlarged. The surface atoms also display changes in registry of upto 1.5%. Our results are in general in good agreement with LEED data including the controversial case of Cu(511). Subtle differences are found with results obtained from semi-empirical potentials.Comment: 21 pages and 3 figure

Dynamical properties of liquid Al near melting. An orbital-free molecular dynamics study

The static and dynamic structure of liquid Al is studied using the orbital free ab-initio molecular dynamics method. Two thermodynamic states along the coexistence line are considered, namely T = 943 K and 1323 K for which X-ray and neutron scattering data are available. A new kinetic energy functional, which fulfills a number of physically relevant conditions is employed, along with a local first principles pseudopotential. In addition to a comparison with experiment, we also compare our ab-initio results with those obtained from conventional molecular dynamics simulations using effective interionic pair potentials derived from second order pseudopotential perturbation theory.Comment: 15 pages, 12 figures, 2 tables, submitted to PR

Diagnosis and management of bone fragility in diabetes: an emerging challenge

Fragility fractures are increasingly recognized as a complication of both type 1 and type 2 diabetes, with fracture risk that increases with disease duration and poor glycemic control. Yet the identification and management of fracture risk in these patients remains challenging. This review explores the clinical characteristics of bone fragility in adults with diabetes and highlights recent studies that have evaluated bone mineral density (BMD), bone microstructure and material properties, biochemical markers, and fracture prediction algorithms (i.e., FRAX) in these patients. It further reviews the impact of diabetes drugs on bone as well as the efficacy of osteoporosis treatments in this population. We finally propose an algorithm for the identification and management of diabetic patients at increased fracture risk

A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers

Breast cancer (BC) risk for BRCA1 and BRCA2 mutation carriers varies by genetic and familial factors. About 50 common variants have been shown to modify BC risk for mutation carriers. All but three, were identified in general population studies. Other mutation carrier-specific susceptibility variants may exist but studies of mutation carriers have so far been underpowered. We conduct a novel case-only genome-wide association study comparing genotype frequencies between 60,212 general population BC cases and 13,007 cases with BRCA1 or BRCA2 mutations. We identify robust novel associations for 2 variants with BC for BRCA1 and 3 for BRCA2 mutation carriers, P < 10−8, at 5 loci, which are not associated with risk in the general population. They include rs60882887 at 11p11.2 where MADD, SP11 and EIF1, genes previously implicated in BC biology, are predicted as potential targets. These findings will contribute towards customising BC polygenic risk scores for BRCA1 and BRCA2 mutation carriers

Systematic validation of specific phenotypic markers for in vitro polarized human macrophages.

Item does not contain fulltextBACKGROUND: Polarization of macrophages by specific micro-environmental conditions impacts upon their function following subsequent activation. This study aimed to systematically validate robust phenotypic markers for in vitro polarized human macrophages in order to facilitate the study of macrophage subsets in vivo. METHODS: Human peripheral blood monocytes were polarized in vitro with IFN-gamma, IL-4, or IL-10. Similar experiments were performed with TNF, IL-13, dexamethasone, M-CSF and GM-CSF as polarizing stimuli. Phenotypic markers were assessed by flow cytometry and qPCR. RESULTS: IFN-gamma polarized macrophages (MPhi(IFN-gamma)) specifically enhanced membrane expression of CD80 and CD64, IL-4 polarized macrophages (MPhi(IL-4)) mainly upregulated CD200R and CD206, and downregulated CD14 levels, and IL-10 polarized macrophages (MPhi(IL-10)) selectively induced CD163, CD16, and CD32. The expression profiles of the most specific markers were confirmed by qPCR, dose-response experiments, and the use of alternative polarizing factors for each macrophage subset (TNF, IL-13, and dexamethasone, respectively). GM-CSF polarized macrophages (MPhi(GM-CSF)) upregulated CD80 but not CD64 expression, showing a partial phenotypic similarity with MPhi(IFN-gamma), and also upregulated the expression of the alternative activation marker CD206. M-CSF polarized macrophages (MPhi(M-CSF)) not only expressed increased levels of CD163 and CD16, resembling MPhi(IL-10,) but also displayed high levels of CD64. The phenotype of MPhi(M-CSF) could be further modulated by additional polarization with IFN-gamma, IL-4, or IL-10, whereas MPhi(GM-CSF) showed less phenotypic plasticity. CONCLUSION: This study validated CD80 as the most robust phenotypic marker for human MPhi(IFN-gamma), whereas CD200R was upregulated and CD14 was specifically downregulated on MPhi(IL-4). CD163 and CD16 were found to be specific markers for MPhi(IL-10). The GM-CSF/M-CSF differentiation model showed only a partial phenotypic similarity with the IFN-gamma/IL-4/IL-10 induced polarization