Properties and biases of the global heat flow compilation

Geothermal heat flow is inferred from the gradient of temperature values in boreholes or short-penetration probe measurements. Such measurements are expensive and logistically challenging in remote locations and, therefore, often targeted to regions of economic interest. As a result, measurements are not distributed evenly. Some tectonic, geologic and even topographic settings are overrepresented in global heat flow compilations; other settings are underrepresented or completely missing. These limitations in representation have implications for empirical heat flow models that use catalogue data to assign heat flow by the similarity of observables. In this contribution, we analyse the sampling bias in the Global Heat Flow database of the International Heat Flow Commission; the most recent and extensive heat flow catalogue, and discuss the implications for accurate prediction and global appraisals. We also suggest correction weights to reduce the bias when the catalogue is used for empirical modelling. From comparison with auxiliary variables, we find that each of the following settings is highly overrepresented for heat flow measurements; continental crust, sedimentary rocks, volcanic rocks, and Phanerozoic regions with hydrocarbon exploration. Oceanic crust, cratons, and metamorphic rocks are underrepresented. The findings also suggest a general tendency to measure heat flow in areas where the values are elevated; however, this conclusion depends on which auxiliary variable is under consideration to determine the settings. We anticipate that using our correction weights to balance disproportional representation will improve empirical heat flow models for remote regions and assist in the ongoing assessment of the Global Heat Flow database

Australian-Antarctic breakup and seafloor spreading: Balancing geological and geophysical constraints

The motion of diverging tectonic plates is typically constrained by geophysical data from preserved ocean crust. However, constraining plate motions during continental rifting and the breakup process relies on balancing evidence from a diverse range of geological and geophysical observations, often subject to differing interpretations. Reconstructing the evolution of rifting and breakup between Australia and Antarctica epitomizes the challenges involved in creating detailed models of Pangea breakup. In this example, differing degrees of emphasis on and alternative interpretations of offshore geophysical data, in particular magnetic anomalies and seismic reflection profiles, and onshore geological data, lead to starkly contrasting views of how the continents were configured at the onset of Mesozoic rifting. Here, we critically review reconstructions of rifting and breakup in the light of all available geological and geophysical data, including magnetic anomalies, fracture zones, conjugate crustal domains, amounts of continental extension, continental geology, plate boundary locations, break-up ages and stratigraphy. We identify the most viable plate tectonic reconstructions both with and without the input of the oldest, more controversial magnetic anomaly interpretations, and discuss implications for reconstructions of other margin pairs. Our analysis highlights key discrepancies between reconstructions based solely on geological piercing points, and those based on a range of constraints. These insights provide a powerful framework for reducing the range of viable models for Australian-Antarctic rifting, and provide key lessons for future efforts aimed at constraining pre- and syn-rift plate tectonic reconstructions. © 2018 Elsevier B.V.S.E.W. and R.D.M. were supported by ARC grants DP130101946 and IH130200012 . J.M.W. was supported by ARC grant DE140100376 . J.A.H was supported under Australian Research Council ‘s Special Research Initiative for Antarctic Gateway Partnership SR140300001 . S.E.W. and J.M.W. were supported by ARC grant DP180102280

Scratching the Surface: A Marine Sediment Provenance Record From the Continental Slope of Central Wilkes Land, East Antarctica

The geology of Wilkes Land, East Antarctica, is masked by kilometers of ice and remains largely unexplored. Defining the sediment provenance adjacent to this hidden region is important for distinguishing the proximal subglacial basement terranes and refining the dynamic regional glaciological history. This study presents a detrital sediment provenance record spanning c. 23.5 ka from the continental slope of central Wilkes Land. Sediment provenance was characterized using U-Pb geochronology and trace element geochemistry from detrital zircon, titanite and apatite, and Pb isotopic signatures from detrital feldspar. These data were compared with new feldspar Pb-isotopic signatures and existing U-Pb zircon data sets from rare nearby coastal outcrop. A principally igneous source was revealed with dominant age populations between c. 1,360-1,100 Ma and c. 1,620-1,490 Ma, characteristic of rocks of the proximal Wilkes and Banzare provinces, respectively. Minor detritus was additionally sourced from the proximal Nuyina Province (c. 1,450-1,390 Ma). Temporal variation in the climate and ice sheet configuration are likely responsible for subtle downcore changes observed in detrital sediment provenance. High sedimentation rates during the glacial period suggest reworking of continental shelf sediments and downslope transport in debris flows during ice sheet advance. Glacial meltwater fluxes fed largely by the Totten Glacier were responsible for supplying detritus during deglaciation. During interglacials, detritus was derived from a broad coastal region and delivered to the slope via multiple glacial outlets. These results present the first substantial offshore evidence to support recent interpretations that the subglacial crust of central Wilkes Land has a dominantly Mesoproterozoic history.Sian Tooze was supported by a PhD scholarship from the Australian Research Council's Special Research Initiative for the Antarctic Gateway Partnership (Project ID SR140300001). Taryn L. Noble acknowledges support from the Science and Industry Endow-ment Fund, and Australian Antarctic Science Program Grant 441

Pyrite Textures, Trace Elements and Sulfur Isotope Chemistry of Bijaigarh Shales, Vindhyan Basin, India and Their Implications

The Vindhyan Basin in central India preserves a thick (~5 km) sequence of sedimentary and lesser volcanic rocks that provide a valuable archive of a part of the Proterozoic (~1800-900 Ma) in India. Here, we present an analysis of key sedimentary pyrite textures and their trace element and sulfur isotope compositions in the Bijaigarh Shale (1210 ± 52 Ma) in the Vindhyan Supergroup, using reflected light microscopy, LA-ICP-MS and SHRIMP-SI, respectively. A variety of sedimentary pyrite textures (fine-grained disseminated to aggregates, framboids, lags, and possibly microbial pyrite textures) are observed reflecting quiet and strongly anoxic water column conditions punctuated by occasional high-energy events (storm incursions). Key redox sensitive or sensitive to oxidative weathering trace elements (Co, Ni, Zn, Mo, Se) and ratios of (Se/Co, Mo/Co, Zn/Co) measured in sedimentary pyrites from the Bijaigarh Shale are used to infer atmospheric redox conditions during its deposition. Most trace elements are depleted relative to Proterozoic mean values. Sulfur isotope compositions of pyrite, measured using SHRIMP-SI, show an increase in δ34S as we move up stratigraphy with positive δ34S values ranging from 5.99% (lower) to 26.08� (upper). We propose limited sulphate supply caused the pyrites to incorporate the heavier isotope. Overall, we interpret these low trace element signatures and heavy sulfur isotope compositions to indicate relatively suppressed oxidative weathering on land during the deposition of the Bijaigarh Shale

Antarctic geothermal heat flow: future research directions

Antarctic geothermal heat flow (GHF) affects the ice sheet temperature, determining how it slides and internally deforms, as well as the rheological behaviour of the lithosphere. However, GHF remains poorly constrained, with few borehole-derived estimates, and there are large discrepancies in currently available glaciological and geophysical estimates. This SCAR White Paper details current methods, discusses their challenges and limitations, and recommends key future directions in GHF research. We highlight the timely need for a more multidisciplinary and internationally-coordinated approach to tackle this complex problem

Legacy genetics of Arachis cardenasii in the peanut crop shows the profound benefits of international seed exchange

A great challenge for humanity is feeding its growing population while minimizing ecosystem damage and climate change. Here, we uncover the global benefits arising from the introduction of one wild species accession to peanut-breeding programs decades ago. This work emphasizes the importance of biodiversity to crop improvement: peanut cultivars with genetics from this wild accession provided improved food security and reduced use of fungicide sprays. However, this study also highlights the perilous consequences of changes in legal frameworks and attitudes concerning biodiversity. These changes have greatly reduced the botanical collections, seed exchanges, and international collaborations which are essential for the continued diversification of crop genetics and, consequently, the long-term resilience of crops against evolving pests and pathogens and changing climate.The narrow genetics of most crops is a fundamental vulnerability to food security. This makes wild crop relatives a strategic resource of genetic diversity that can be used for crop improvement and adaptation to new agricultural challenges. Here, we uncover the contribution of one wild species accession, Arachis cardenasii GKP 10017, to the peanut crop (Arachis hypogaea) that was initiated by complex hybridizations in the 1960s and propagated by international seed exchange. However, until this study, the global scale of the dispersal of genetic contributions from this wild accession had been obscured by the multiple germplasm transfers, breeding cycles, and unrecorded genetic mixing between lineages that had occurred over the years. By genetic analysis and pedigree research, we identified A. cardenasii–enhanced, disease-resistant cultivars in Africa, Asia, Oceania, and the Americas. These cultivars provide widespread improved food security and environmental and economic benefits. This study emphasizes the importance of wild species and collaborative networks of international expertise for crop improvement. However, it also highlights the consequences of the implementation of a patchwork of restrictive national laws and sea changes in attitudes regarding germplasm that followed in the wake of the Convention on Biological Diversity. Today, the botanical collections and multiple seed exchanges which enable benefits such as those revealed by this study are drastically reduced. The research reported here underscores the vital importance of ready access to germplasm in ensuring long-term world food security.Genome sequence, genotyping, pedigree information, and yield trial data have been deposited in National Center for Biotechnology Information (NCBI), PeanutBase, and USDA Data Repository (NCBI: JADQCP000000000) (14). Datasets S1–S6 are available at USDA Ag Data Commons: https://data.nal.usda.gov/dataset/data-legacy-genetics-arachis-cardenasii-peanut-crop-v2 (17). All other study data are included in the article and/or supporting information

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

<p>Abstract</p> <p>Background</p> <p><it>Eucalyptus </it>species are among the most planted hardwoods in the world because of their rapid growth, adaptability and valuable wood properties. The development and integration of genomic resources into breeding practice will be increasingly important in the decades to come. Bacterial artificial chromosome (BAC) libraries are key genomic tools that enable positional cloning of important traits, synteny evaluation, and the development of genome framework physical maps for genetic linkage and genome sequencing.</p> <p>Results</p> <p>We describe the construction and characterization of two deep-coverage BAC libraries EG_Ba and EG_Bb obtained from nuclear DNA fragments of <it>E. grandis </it>(clone BRASUZ1) digested with <it>Hind</it>III and <it>BstY</it>I, respectively. Genome coverages of 17 and 15 haploid genome equivalents were estimated for EG_Ba and EG_Bb, respectively. Both libraries contained large inserts, with average sizes ranging from 135 Kb (Eg_Bb) to 157 Kb (Eg_Ba), very low extra-nuclear genome contamination providing a probability of finding a single copy gene ≥ 99.99%. Libraries were screened for the presence of several genes of interest <it>via </it>hybridizations to high-density BAC filters followed by PCR validation. Five selected BAC clones were sequenced and assembled using the Roche GS FLX technology providing the whole sequence of the <it>E. grandis </it>chloroplast genome, and complete genomic sequences of important lignin biosynthesis genes.</p> <p>Conclusions</p> <p>The two <it>E. grandis </it>BAC libraries described in this study represent an important milestone for the advancement of <it>Eucalyptus </it>genomics and forest tree research. These BAC resources have a highly redundant genome coverage (> 15×), contain large average inserts and have a very low percentage of clones with organellar DNA or empty vectors. These publicly available BAC libraries are thus suitable for a broad range of applications in genetic and genomic research in <it>Eucalyptus </it>and possibly in related species of <it>Myrtaceae</it>, including genome sequencing, gene isolation, functional and comparative genomics. Because they have been constructed using the same tree (<it>E. grandis </it>BRASUZ1) whose full genome is being sequenced, they should prove instrumental for assembly and gap filling of the upcoming <it>Eucalyptus </it>reference genome sequence.</p

Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses

To understand neurological complications of COVID-19 better both acutely and for recovery, we measured markers of brain injury, inflammatory mediators, and autoantibodies in 203 hospitalised participants; 111 with acute sera (1–11 days post-admission) and 92 convalescent sera (56 with COVID-19-associated neurological diagnoses). Here we show that compared to 60 uninfected controls, tTau, GFAP, NfL, and UCH-L1 are increased with COVID-19 infection at acute timepoints and NfL and GFAP are significantly higher in participants with neurological complications. Inflammatory mediators (IL-6, IL-12p40, HGF, M-CSF, CCL2, and IL-1RA) are associated with both altered consciousness and markers of brain injury. Autoantibodies are more common in COVID-19 than controls and some (including against MYL7, UCH-L1, and GRIN3B) are more frequent with altered consciousness. Additionally, convalescent participants with neurological complications show elevated GFAP and NfL, unrelated to attenuated systemic inflammatory mediators and to autoantibody responses. Overall, neurological complications of COVID-19 are associated with evidence of neuroglial injury in both acute and late disease and these correlate with dysregulated innate and adaptive immune responses acutely

Mesoproterozoic Tasmania : witness to the East Antarctica-Laurentia connection within Nuna

Most recent paleogeographic reconstructions of the supercontinent Nuna juxtapose the North Australian craton, Mawson continent (South Australia-East Antarctica), and Laurentia between 1.6 Ga and 1.3 Ga but differ in their relative positioning. The >10-km-thick siliciclastic Rocky Cape Group of Tasmania was deposited in an opening marine basin on the margin of East Antarctica during Nuna breakup. Based on a similar detrital zircon signature and depositional age, the Rocky Cape Group has been correlated with the upper Belt-Purcell Supergroup in Laurentia, thus representing a key tie point within Nuna. Here the detrital zircon age signature of Mesoproterozoic Rocky Cape Group quartzites is investigated by comparing new detrital zircon U-Pb-Hf isotopic data to an extensive compilation of zircon isotopic data from Australia, East Antarctica, and Laurentia. Our analysis demonstrates that the Rocky Cape Group is unlikely to have been sourced from any geological terrane exposed in present-day Australia. Instead, zircon U-Pb-Hf isotopic data from basement terranes in Laurentia and East Antarctica show striking similarities to the Rocky Cape Group detrital signature. Paleocurrent data indicate that the majority of sediment in the Rocky Cape Group was sourced from Laurentia, which was to the southeast (present-day coordinates) of Tasmania, supporting a SWEAT-like (southwest United States-East Antarctica) configuration for Nuna. We suggest that rifting left a thinned continental connection between East Antarctica and Laurentia onto which the lower-middle Rocky Cape Group was deposited between 1.45 and 1.30 Ga.4 page(s

Antarctic geothermal heat flow model: Aq1

We present a refined map of geothermal heat flow for Antarctica, Aq1, based on multiple observables. The map is generated using a similarity detection approach by attributing observables from geophysics and geology to a large number of high-quality heat flow values (5792) from other continents. Observables from global, continental and regional datasets for Antarctica are used with a weighting function that allows the degree of similarity to increase with proximity and how similar the observables are. The similarity detection parameters are optimized through cross-correlation. For each grid cell in Antarctica, a weighted average heat flow value and uncertainty metrics are calculated