Cluster Structure in Cosmological Simulations I: Correlation to Observables, Mass Estimates, and Evolution

We use Enzo, a hybrid Eulerian AMR/N-body code including non-gravitational heating and cooling, to explore the morphology of the X-ray gas in clusters of galaxies and its evolution in current generation cosmological simulations. We employ and compare two observationally motivated structure measures: power ratios and centroid shift. Overall, the structure of our simulated clusters compares remarkably well to low-redshift observations, although some differences remain that may point to incomplete gas physics. We find no dependence on cluster structure in the mass-observable scaling relations, T_X-M and Y_X-M, when using the true cluster masses. However, estimates of the total mass based on the assumption of hydrostatic equilibrium, as assumed in observational studies, are systematically low. We show that the hydrostatic mass bias strongly correlates with cluster structure and, more weakly, with cluster mass. When the hydrostatic masses are used, the mass-observable scaling relations and gas mass fractions depend significantly on cluster morphology, and the true relations are not recovered even if the most relaxed clusters are used. We show that cluster structure, via the power ratios, can be used to effectively correct the hydrostatic mass estimates and mass-scaling relations, suggesting that we can calibrate for this systematic effect in cosmological studies. Similar to observational studies, we find that cluster structure, particularly centroid shift, evolves with redshift. This evolution is mild but will lead to additional errors at high redshift. Projection along the line of sight leads to significant uncertainty in the structure of individual clusters: less than 50% of clusters which appear relaxed in projection based on our structure measures are truly relaxed.Comment: 57 pages, 18 figures, accepted to ApJ, updated definition of T_X and M_gas but results unchanged, for version with full resolution figures, see http://www.ociw.edu/~tesla/sims.ps.g

AGN heating and dissipative processes in galaxy clusters

Recent X-ray observations reveal growing evidence for heating by active galactic nuclei (AGN) in clusters and groups of galaxies. AGN outflows play a crucial role in explaining the riddle of cooling flows and the entropy problem in clusters. Here we study the effect of AGN on the intra-cluster medium in a cosmological simulation using the adaptive mesh refinement FLASH code. We pay particular attention to the effects of conductivity and viscosity on the dissipation of weak shocks generated by the AGN activity in a realistic galaxy cluster. Our 3D simulations demonstrate that both viscous and conductive dissipation play an important role in distributing the mechanical energy injected by the AGN, offsetting radiative cooling and injecting entropy to the gas. These processes are important even when the transport coefficients are at a level of 10% of the Spitzer value. Provided that both conductivity and viscosity are suppressed by a comparable amount, conductive dissipation is likely to dominate over viscous dissipation. Nevertheless, viscous effects may still affect the dynamics of the gas and contribute a significant amount of dissipation compared to radiative cooling. We also present synthetic Chandra observations. We show that the simulated buoyant bubbles inflated by the AGN, and weak shocks associated with them, are detectable with the Chandra observatory.Comment: accepted to ApJ, minor change

The Properties of X-ray Cold Fronts in a Statistical Sample of Simulated Galaxy Clusters

We examine the incidence of cold fronts in a large sample of galaxy clusters extracted from a (512h^-1 Mpc) hydrodynamic/N-body cosmological simulation with adiabatic gas physics computed with the Enzo adaptive mesh refinement code. This simulation contains a sample of roughly 4000 galaxy clusters with M > 10^14 M_sun at z=0. For each simulated galaxy cluster, we have created mock 0.3-8.0 keV X-ray observations and spectroscopic-like temperature maps. We have searched these maps with a new automated algorithm to identify the presence of cold fronts in projection. Using a threshold of a minimum of 10 cold front pixels in our images, corresponding to a total comoving length L_cf > 156h^-1 kpc, we find that roughly 10-12% of all projections in a mass-limited sample would be classified as cold front clusters. Interestingly, the fraction of clusters with extended cold front features in our synthetic maps of a mass-limited sample trends only weakly with redshift out to z=1.0. However, when using different selection functions, including a simulated flux limit, the trending with redshift changes significantly. The likelihood of finding cold fronts in the simulated clusters in our sample is a strong function of cluster mass. In clusters with M>7.5x10^14 M_sun the cold front fraction is 40-50%. We also show that the presence of cold fronts is strongly correlated with disturbed morphology as measured by quantitative structure measures. Finally, we find that the incidence of cold fronts in the simulated cluster images is strongly dependent on baryonic physics.Comment: 16 pages, 21 figures, Accepted to Ap

Post-harvest entomology research in the United States Department of Agriculture–Agricultural Research Service

This is a review of current post-harvest entomology research conducted by the Agricultural Research Service, the research branch of the US Department of Agriculture. The review covers both durable and perishable commodities. Research on biochemistry, genetics, physiology, monitoring and control of insects infesting stored grain, dried fruits and nuts, and processed commodities is reviewed. Research on development of quarantine treatments, particularly for fruit flies, is also reviewed, including research on thermal and irradiation treatments and a discussion of risk management for quarantine pests. Two areas of research are covered more extensively: a project to map the genome of the red flour beetle, Tribolium castaneum, and the use of near-infrared spectroscopy for detection of hidden infestations in grain, quantification of insect fragments in food, determination of quality in dried fruits, identification of insect species and age-grading insects. Future research directions are identified

Post-harvest entomology research in the United States Department of Agriculture–Agricultural Research Service

This is a review of current post-harvest entomology research conducted by the Agricultural Research Service, the research branch of the US Department of Agriculture. The review covers both durable and perishable commodities. Research on biochemistry, genetics, physiology, monitoring and control of insects infesting stored grain, dried fruits and nuts, and processed commodities is reviewed. Research on development of quarantine treatments, particularly for fruit flies, is also reviewed, including research on thermal and irradiation treatments and a discussion of risk management for quarantine pests. Two areas of research are covered more extensively: a project to map the genome of the red flour beetle, Tribolium castaneum, and the use of near-infrared spectroscopy for detection of hidden infestations in grain, quantification of insect fragments in food, determination of quality in dried fruits, identification of insect species and age-grading insects. Future research directions are identified

Structure and Turbulence in Simulated Galaxy Clusters and the Implications for the Formation of Radio Halos

We track the histories of massive clusters of galaxies formed within a cosmological hydrodynamic simulation. Specifically, we track the time evolution of the energy in random bulk motions of the intracluster medium and X-ray measures of cluster structure and their relationship to cluster mergers. We aim to assess the viability of the turbulent re-acceleration model for the generation of giant radio halos by comparing the level of turbulent kinetic energy in simulated clusters with the observed properties of radio halo clusters, giving particular attention to the association of radio halos to clusters with disturbedX-ray structures. The evolution of X-ray cluster structure and turbulence kinetic energy, k, in simulations can then inform us about the expected lifetime of radio halos and the fraction of clusters as a function of redshift expected to host them. We find strong statistical correlation of disturbed structure measures and the presence of enhancements in k. Specifically, quantitatively "disturbed", radio halo-like X-ray morphology in our sample indicates a 92% chance of the cluster in question having k elevated to more than twice its minimum value over the cluster's life. The typical lifetime of episodes of elevated turbulence is on the order of 1 Gyr, though these periods can last 5 Gyrs or more. This variation reflects the wide range of cluster histories; while some clusters undergo complex and repeated mergers spending a majority of their time in elevated k states, other clusters are relaxed over nearly their entire history. We do not find a bimodal relationship between cluster X-ray luminosity and the total energy in turbulence that might account directly for a bimodal L_X-P_{1.4 GHz} relation. However, our result may be consistent with the observed bimodality, as here we are not including a full treatment of cosmic rays sources and magnetic fields.Comment: 15 pages, 12 figures, MNRAS Submitte

4-OH-TEMPO prevents the morphological alteration of rat thymocytes primed to apoptosis by oxidative stress inducer ButOOH

Thymocytes exposed to the pro-oxidant tert–butyl-hydroperoxide (ButOOH) display a number of dramatic changes in morphology similar to those observed in the case of dexamethasone-treated cells. Both reagents induce nuclear chromatin peripheral aggregation below the nuclear membrane. Some nuclei themselves break up producing two or more fragments. ButOOH-treated cells are morphologically characterised by cell shrinkage, extensive surface blebbing and, finally, fragmentation into membrane–bound apoptotic bodies composed of cytoplasm and tightly packed with or without nuclear fragments. An increased level of lipid hydroxyperoxides was detected after exposure of thymocytes to ButOOH. Both oxidative stress markers and morphological damage to cells were prevented by the antioxidant 4-OH-TEMPO