Self-Assembly of Monatomic Complex Crystals and Quasicrystals with a Double-Well Interaction Potential

For the study of crystal formation and dynamics we introduce a simple two-dimensional monatomic model system with a parametrized interaction potential. We find in molecular dynamics simulations that a surprising variety of crystals, a decagonal and a dodecagonal quasicrystal are self-assembled. In the case of the quasicrystals the particles reorder by phason flips at elevated temperatures. During annealing the entropically stabilized decagonal quasicrystal undergoes a reversible phase transition at 65% of the melting temperature into an approximant, which is monitored by the rotation of the de Bruijn surface in hyperspace.Comment: 4 pages, 6 figures. Physical Review Letters, in Press (April 2007

Computer-controlled mass spectrometer for on-line gas analysis

System detects gases in combustion chambers and records their levels of concentration. Simplified data recording and reduction process permits analysis rate of 9 msec per peak and recording of probe position, pressures, temperatures, and mass spectrometer data on same tape. System is applicable to air pollution control

Thomomys bottae pocket gophers of the central Rio Grande Valley, New Mexico: local differentiation, gene flow, and historical biogeography

Representatives of two strongly differentiated geographic units within Thomomys bottae come in contact along the Rio Grande south of Albuquerque, New Mexico. The two forms share an average genic similarity of only 69%, and differ in karyotype by as much as 17 pairs of uniarmed autosomes. This high level of genic and chromosomal differentiation might suggest extremely limited introgression, or perhaps none at all. However, diagnostic alleles at several strongly differentiated loci were detected in contact zone populations of the opposite group, indicating that some gene flow does oc\u3c;ur. Suitable habitat and available land area are limited in the zone of contact, and these factors, in combination with the structure of local breeding populations of pocket gophers, contribute to restriction of gene flow through the contact zone. The measured width of the contact zone corresponds reasonably well with predictions derived from a neutral diffusion cline model under current estimates of gene flow rates and time of secondary contact

Azuleno[8,8a,1,2-def]heptalen

Die Darstellung von Methyl-Derivaten des noch nicht bekannten Azuleno[8.8a,1,2-dej]heptalens (Dicyclohept[cd-ij]-azulen) (1a) gelingt mit Hilfe eines einfachen Syntheseprinzips, das sich mehrfach bereits bei der Herstellung polycyclisch konjugierter nichtbenzoider Systeme bewährte[¹]

Azuleno[8,8a,1,2-def]heptalene

Methyl derivatives of the still unknown hydrocarbon (1a) azuleno[8,8a,1,2-def]heptalene (dicyclohept[cd-ij]azulene) can be prepared by a simple process that has already repeatedly proved its value for preparation of polycyclic condensed non-benzenoid systems[¹]

Performance improvements of supermarket R744 systems by pivoting compressor arrangements

The adoption of the EU F-Gas regulation 517/2014 and the development of the Multi Ejector concept have led CO2 to take center stage as one of the preferred solutions in several applications, at the expense of synthetic refrigerants. Despite the expected significant energy saving in warm climates using the Multi Ejector, the increase in investment costs and level of complexity would hinder its spread. In this work a numerical and experimental campaign have been performed to explore the implementation of “pivoting” compressors, i.e. a technique that enables the medium temperature (MT) and parallel (IT) compressors in a booster system to be interchangeable according to cooling loads, ambient conditions and ejector capacity. The novel configuration presented in this work helps to downsize the installed compressor capacity in ejector-supported systems while maintaining all the benefits due to the ejector. The basic version of the solution is based on: i) MT and low temperature (LT) compressors, ii) high pressure controlled through a Multi Ejector both during summer and winter conditions. The tests performed in the laboratory proved how the “pivoting” solution is beneficial to attain a higher degree of flexibility with more compact systems while maintaining the efficiency and justifying economically the ejector implementation. An additional solution called LT “pivoting”, i.e. connecting LT compressors either to MT or IT compressors, proved to be particularly useful for energy saving.Performance improvements of supermarket R744 systems by pivoting compressor arrangementsacceptedVersio

Unifying Parsimonious Tree Reconciliation

Evolution is a process that is influenced by various environmental factors, e.g. the interactions between different species, genes, and biogeographical properties. Hence, it is interesting to study the combined evolutionary history of multiple species, their genes, and the environment they live in. A common approach to address this research problem is to describe each individual evolution as a phylogenetic tree and construct a tree reconciliation which is parsimonious with respect to a given event model. Unfortunately, most of the previous approaches are designed only either for host-parasite systems, for gene tree/species tree reconciliation, or biogeography. Hence, a method is desirable, which addresses the general problem of mapping phylogenetic trees and covering all varieties of coevolving systems, including e.g., predator-prey and symbiotic relationships. To overcome this gap, we introduce a generalized cophylogenetic event model considering the combinatorial complete set of local coevolutionary events. We give a dynamic programming based heuristic for solving the maximum parsimony reconciliation problem in time O(n^2), for two phylogenies each with at most n leaves. Furthermore, we present an exact branch-and-bound algorithm which uses the results from the dynamic programming heuristic for discarding partial reconciliations. The approach has been implemented as a Java application which is freely available from http://pacosy.informatik.uni-leipzig.de/coresym.Comment: Peer-reviewed and presented as part of the 13th Workshop on Algorithms in Bioinformatics (WABI2013

Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions

Systematic analysis of the RNA-protein interactome requires robust and scalable methods. We here show the combination of two completely orthogonal, generic techniques to identify RNA-protein interactions: PAR-CLIP reveals a collection of RNAs bound to a protein whereas SILAC-based RNA pull-downs identify a group of proteins bound to an RNA. We investigated binding sites for five different proteins (IGF2BP1-3, QKI and PUM2) exhibiting different binding patterns. We report near perfect agreement between the two approaches. Nevertheless, they are non-redundant, and ideally complement each other to map the RNA-protein interaction network