Predators, reproductive parasites, and the persistence of poor males on leks

Lekking males are thought to face strong directional selection on secondary sexual traits. How variation in male traits can persist under these conditions remains problematic (the lek paradox). Here, we present several game-theoretic models that show that avoidance of costly and mobile predators, sneakers, or brood parasites (enemies) leads to variation in female choice. This can result in maintenance of variation in male quality. "Enemies” will congregate around higher quality males. Females must then trade-off the benefits of mating with high-quality males against the increased risk of enemies. At equilibrium, the models predict a positive correlation between the quality of a male and the proportions of both enemies and females visiting him. In the first model, we use this framework to predict the lowest quality male on the lek that will receive any matings. In the second model, we examine the influence of this female-enemy game on the maintenance of variation in male quality. Low-quality males are likely to persist when enemies are costly to females or occur at high density, and when there is some spatial structure on the lek, so that neighboring males are typically of similar quality. If enemies are more costly to males than to females, high-quality males may benefit from receiving fewer female visits. In the third model, we consider the special case when enemies are male reproductive parasites. These models illustrate the importance of considering the simultaneous decisions of multiple players in mate choice game

Hotshots, hot spots, and female preference: exploring lek formation models with a bower-building cichlid fish

In many animals, males congregate in leks that females visit for the sole purpose of mating. We observed male and female behavior on 3 different-sized leks of the bower-building cichlid fish Nyassachromis cf. microcephalus to test predictions of 3 prominent lek models: the "hotshot,” "hot spot,” and "female preference” models. In this system, we were able to refine these predictions by distinguishing between indirect mate choice, by which females restrict their set of potential mates in the absence of individual male assessment, and direct mate choice, by which females assess males and their territories through dyadic behavioral interactions. On no lek were males holding central territories favored by indirect or direct mate choice, contrary to the prediction of the hotshot model that leks form because inferior males establish territories surrounding hotshot males preferred by females. Average female encounter rate of males increased with lek size, a pattern typically interpreted as evidence that leks form through female preference for lekking males, rather than because males congregate in hot spots of high female density. Female propensity to engage in premating behavior once courted did not increase with lek size, suggesting female preference for males on larger leks operated through indirect choice rather than direct choice based on individual assessment. The frequency of male-male competitive interactions increased with lek size, whereas their foraging rate decreased, implying a cost to males maintaining territories on larger leks. Together these data most strongly support the female preference model, where females may benefit through indirect mate choice for males able to meet the competitive cost of occupying larger lek

Female mouthbrooders in control of pre- and postmating sexual selection

The fertilization mode determines which sex has greater control over the offspring's sires. With internal fertilization, females can strongly influence the chances of different males' ejaculates to fertilize their eggs by the postmating sexual selection process referred to as cryptic female choice. In contrast, when fertilization is external and multiple males compete in this process, the outcome of pre- and postmating sexual selection is largely determined by the competitive quality of males and their sperm. Intermediate modes of fertilization as found in mouthbrooding fishes might allow for a greater maternal influence on her offspring's sire. Here, we show that in the maternal mouthbrooder Ophthalmotilapia ventralis, females collect sperm from different males in their mouth, and males can successfully fertilize eggs even if the female did not lay eggs with them. In the field, 25 of 30 clutches had multiple sires, and the fertilization success was significantly biased toward particular males in most clutches. A mate choice experiment revealed that females prefer to spawn with males possessing strongly elongated pelvic fins, a conspicuous secondary sexual character of males in this cichlid. Additionally, the body length of males partly explained their success in sperm competition within the females' mouth, a factor without apparent influence on female choice of partners with which to lay eggs. Hence, successful sires are determined by a 2-step process that is largely under female control; females select which males to spawn with and from which males they collect additional ejaculates for the subsequent sperm competition in their mout

A Dense Linkage Map of Lake Victoria Cichlids Improved the Pundamilia Genome Assembly and Revealed a Major QTL for Sex-Determination.

Genetic linkage maps are essential for comparative genomics, high quality genome sequence assembly and fine scale quantitative trait locus (QTL) mapping. In the present study we identified and genotyped markers via restriction-site associated DNA (RAD) sequencing and constructed a genetic linkage map based on 1,597 SNP markers of an interspecific F2 cross of two closely related Lake Victoria cichlids (Pundamilia pundamilia and P sp. 'red head'). The SNP markers were distributed on 22 linkage groups and the total map size was 1,594 cM with an average marker distance of 1.01 cM. This high-resolution genetic linkage map was used to anchor the scaffolds of the Pundamilia genome and estimate recombination rates along the genome. Via QTL mapping we identified a major QTL for sex in a ∼1.9 Mb region on Pun-LG10, which is homologous to Oreochromis niloticus LG 23 (Ore-LG23) and includes a well-known vertebrate sex-determination gene (amh)

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

A genomic database of all Earth’s eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth BioGenome Project (EBP), aiming to produce a database of high-quality reference genomes containing all ~1.5 million recognized eukaryotic species. As the European node of the EBP, the European Reference Genome Atlas (ERGA) sought to implement a new decentralised, equitable and inclusive model for producing reference genomes. For this, ERGA launched a Pilot Project establishing the first distributed reference genome production infrastructure and testing it on 98 eukaryotic species from 33 European countries. Here we outline the infrastructure and explore its effectiveness for scaling high-quality reference genome production, whilst considering equity and inclusion. The outcomes and lessons learned provide a solid foundation for ERGA while offering key learnings to other transnational, national genomic resource projects and the EBP.info:eu-repo/semantics/publishedVersio

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.

ABSTRACT: A global genome database of all of Earth’s species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information available. To contribute to a more complete planetary genomic database, scientists and institutions across the world have united under the Earth BioGenome Project (EBP), which plans to sequence and assemble high-quality reference genomes for all ∼1.5 million recognized eukaryotic species through a stepwise phased approach. As the initiative transitions into Phase II, where 150,000 species are to be sequenced in just four years, worldwide participation in the project will be fundamental to success. As the European node of the EBP, the European Reference Genome Atlas (ERGA) seeks to implement a new decentralised, accessible, equitable and inclusive model for producing high-quality reference genomes, which will inform EBP as it scales. To embark on this mission, ERGA launched a Pilot Project to establish a network across Europe to develop and test the first infrastructure of its kind for the coordinated and distributed reference genome production on 98 European eukaryotic species from sample providers across 33 European countries. Here we outline the process and challenges faced during the development of a pilot infrastructure for the production of reference genome resources, and explore the effectiveness of this approach in terms of high-quality reference genome production, considering also equity and inclusion. The outcomes and lessons learned during this pilot provide a solid foundation for ERGA while offering key learnings to other transnational and national genomic resource projects.info:eu-repo/semantics/publishedVersio

Predators, reproductive parasites, and the persistence of poor males on leks

Lekking males are thought to face strong directional selection on secondary sexual traits. How variation in male traits can persist under these conditions remains problematic (the lek paradox). Here, we present several game-theoretic models that show that avoidance of costly and mobile predators, sneakers, or brood parasites (enemies) leads to variation in female choice. This can result in maintenance of variation in male quality. "Enemies" will congregate around higher quality males. Females must then trade-off the benefits of mating with high-quality males against the increased risk of enemies. At equilibrium, the models predict a positive correlation between the quality of a male and the proportions of both enemies and females visiting him. In the first model, we use this framework to predict the lowest quality male on the lek that will receive any matings. In the second model, we examine the influence of this female-enemy game on the maintenance of variation in male quality. Low-quality males are likely to persist when enemies are costly to females or occur at high density, and when there is some spatial structure on the lek, so that neighboring males are typically of similar quality. If enemies are more costly to males than to females, high-quality males may benefit from receiving fewer female visits. In the third model, we consider the special case when enemies are male reproductive parasites. These models illustrate the importance of considering the simultaneous decisions of multiple players in mate choice games. Copyright 2006.alternative reproductive tactics; genetic variation; harassment; predation risk; sexual selection

A Dense Linkage Map of Lake Victoria Cichlids Improved the <i>Pundamilia</i> Genome Assembly and Revealed a Major QTL for Sex-Determination.

Genetic linkage maps are essential for comparative genomics, high quality genome sequence assembly and fine scale quantitative trait locus (QTL) mapping. In the present study we identified and genotyped markers via restriction-site associated DNA (RAD) sequencing and constructed a genetic linkage map based on 1,597 SNP markers of an interspecific F2 cross of two closely related Lake Victoria cichlids (Pundamilia pundamilia and P sp. 'red head'). The SNP markers were distributed on 22 linkage groups and the total map size was 1,594 cM with an average marker distance of 1.01 cM. This high-resolution genetic linkage map was used to anchor the scaffolds of the Pundamilia genome and estimate recombination rates along the genome. Via QTL mapping we identified a major QTL for sex in a ∼1.9 Mb region on Pun-LG10, which is homologous to Oreochromis niloticus LG 23 (Ore-LG23) and includes a well-known vertebrate sex-determination gene (amh)

Hotshots, hot spots, and female preference: exploring lek formation models with a bower-building cichlid fish

In many animals, males congregate in leks that females visit for the sole purpose of mating. We observed male and female behavior on 3 different-sized leks of the bower-building cichlid fish Nyassachromis cf. microcephalus to test predictions of 3 prominent lek models: the "hotshot," "hot spot," and "female preference" models. In this system, we were able to refine these predictions by distinguishing between indirect mate choice, by which females restrict their set of potential mates in the absence of individual male assessment, and direct mate choice, by which females assess males and their territories through dyadic behavioral interactions. On no lek were males holding central territories favored by indirect or direct mate choice, contrary to the prediction of the hotshot model that leks form because inferior males establish territories surrounding hotshot males preferred by females. Average female encounter rate of males increased with lek size, a pattern typically interpreted as evidence that leks form through female preference for lekking males, rather than because males congregate in hot spots of high female density. Female propensity to engage in premating behavior once courted did not increase with lek size, suggesting female preference for males on larger leks operated through indirect choice rather than direct choice based on individual assessment. The frequency of male-male competitive interactions increased with lek size, whereas their foraging rate decreased, implying a cost to males maintaining territories on larger leks. Together these data most strongly support the female preference model, where females may benefit through indirect mate choice for males able to meet the competitive cost of occupying larger leks

Sequential female assessment drives complex sexual selection on bower shape in a cichlid fish

In many animals, sexual selection on male traits results from female mate choice decisions made during a sequence of courtship behaviors. We use a bower-building cichlid fish, Nyassachromis cf. microcephalus, to show how applying standard selection analysis to data on sequential female assessment provides new insights into sexual selection by mate choice. We first show that the cumulative selection differentials confirm previous results suggesting female choice favors males holding large volcano-shaped sand bowers. The sequential assessment analysis reveals these cumulative differentials are the result of selection acting on different bower dimensions during the courtship sequence; females choose to follow males courting from tall bowers, but choose to engage in premating circling with males holding bowers with large diameter platforms. The approach we present extends standard selection analysis by partitioning the variances of increasingly accurate estimates of male reproductive fitness and is applicable to systems in which sequential female assessment drives sexual selection on male traits