The regulation of plant secondary metabolism in response to abiotic stress : interactions between heat shock and elevated CO2

Future climate change is set to have an impact on the physiological performance of global vegetation. Increasing temperature and atmospheric CO2 concentration will affect plant growth, net primary productivity, photosynthetic capability, and other biochemical functions that are essential for normal metabolic function. Alongside the primary metabolic function effects of plant growth and development, the effect of stress on plant secondary metabolism from both biotic and abiotic sources will be impacted by changes in future climate. Using an untargeted metabolomic fingerprinting approach alongside emissions measurements, we investigate for the first time how elevated atmospheric CO2 and temperature both independently and interactively impact on plant secondary metabolism through resource allocation, with a resulting “trade-off” between secondary metabolic processes in Salix spp. and in particular, isoprene biosynthesis. Although it has been previously reported that isoprene is suppressed in times of elevated CO2, and that isoprene emissions increase as a response to short-term heat shock, no study has investigated the interactive effects at the metabolic level. We have demonstrated that at a metabolic level isoprene is still being produced during periods of both elevated CO2 and temperature, and that ultimately temperature has the greater effect. With global temperature and atmospheric CO2 concentrations rising as a result of anthropogenic activity, it is imperative to understand the interactions between atmospheric processes and global vegetation, especially given that global isoprene emissions have the potential to contribute to atmospheric warming mitigation

Confirmation of co-denitrification in grazed grassland

peer-reviewedPasture-based livestock systems are often associated with losses of reactive forms of nitrogen (N) to the environment. Research has focused on losses to air and water due to the health, economic and environmental impacts of reactive N. Di-nitrogen (N2) emissions are still poorly characterized, both in terms of the processes involved and their magnitude, due to financial and methodological constraints. Relatively few studies have focused on quantifying N2 losses in vivo and fewer still have examined the relative contribution of the different N2 emission processes, particularly in grazed pastures. We used a combination of a high 15N isotopic enrichment of applied N with a high precision of determination of 15N isotopic enrichment by isotope-ratio mass spectrometry to measure N2 emissions in the field. We report that 55.8 g N m−2 (95%, CI 38 to 77 g m−2) was emitted as N2 by the process of co-denitrification in pastoral soils over 123 days following urine deposition (100 g N m−2), compared to only 1.1 g N m−2 (0.4 to 2.8 g m−2) from denitrification. This study provides strong evidence for co-denitrification as a major N2 production pathway, which has significant implications for understanding the N budgets of pastoral ecosystems.The authors are grateful for the funding that was provided through the Research Stimulus Fund Program administered by the Department of Agriculture & Food under the National Development Plan 2007–2013 RSF 07536. The first author is grateful for the funding provided by Teagasc through the Walsh Fellowship Scheme

Latent anti-nutrients and unintentional breeding consequences in Australian Sorghum bicolor varieties

Modern feed quality sorghum grain has been bred to reduce anti-nutrients, most conspicuously condensed tannins, but its inclusion in the diets of monogastric animals can still result in variable performance that is only partially understood. Sorghum grain contains several negative intrinsic factors, including non-tannin phenolics and polyphenols, phytate, and kafirin protein, which may be responsible for these muted feed performances. To better understand the non-tannin phenolic and polyphenolic metabolites that may have negative effects on nutritional parameters, the chemical composition of sorghum grain polyphenol extracts from three commercial varieties (MR-Buster, Cracka, and Liberty) was determined through the use of an under-studied, alternative analytical approach involving Fourier-transform infrared (FT-IR) spectroscopy and direct ionization mass spectrometry. Supervised analyses and interrogation of the data contributing to variation resulted in the identification of a variety of metabolites, including established polyphenols, lignin-like anti-nutrients, and complex sugars, as well as high levels of fatty acids which could contribute to nutritional variation and underperformance in monogastrics. FT-IR and mass spectrometry could both discriminate among the different sorghum varieties indicating that FT-IR, rather than more sophisticated chromatographic and mass spectrometric methods, could be incorporated into quality control applications

Statistical analysis of nitrous oxide emission factors from pastoral agriculture field trials conducted in New Zealand

AbstractBetween 11 May 2000 and 31 January 2013, 185 field trials were conducted across New Zealand to measure the direct nitrous oxide (N2O) emission factors (EF) from nitrogen (N) sources applied to pastoral soils. The log(EF) data were analysed statistically using a restricted maximum likelihood (REML) method. To estimate mean EF values for each N source, best linear unbiased predictors (BLUPs) were calculated. For lowland soils, mean EFs for dairy cattle urine and dung, sheep urine and dung and urea fertiliser were 1.16 ± 0.19% and 0.23 ± 0.05%, 0.55 ± 0.19% and 0.08 ± 0.02% and 0.48 ± 0.13%, respectively, each significantly different from one another (p < 0.05), except for sheep urine and urea fertiliser. For soils in terrain with slopes >12°, mean EFs were significantly lower. Thus, urine and dung EFs should be disaggregated for sheep and cattle as well as accounting for terrain

Flow interactions with an aquatic macrophyte: a field study using stereoscopic particle image velocimetry

This paper reports the morphology of a natural patch of Ranunculus penicillatus and presents high-resolution measurements of flow velocities in its wake using a stereoscopic PIV field measurement system. The patch was 3.80 m long, 1.24 m wide and caused substantial changes to downstream mean velocities and turbulence. Vertical profiles of streamwise mean velocity were not logarithmic and flow was redirected under the positively buoyant canopy, enhancing vertical turbulent mixing in the wake and generating a large region where the velocity covariance u'w' was positive. Turbulent kinetic energy was enhanced downstream from the patch lateral shear layer, but not at the centre of the wake. Spectra downstream from the patch showed that turbulence was neither dominated by fine-scale nor large-scale structures, likely due to the low energy of the flow conditions and lack of a developed vortex street within the measurement domain. Sedimentation was observed at the upstream end of the patch, but not underneath the floating canopy. The methods and results of this work will be useful for planning other in situ studies. Also, the reported data on macrophyte geometry and biometrics will assist with the design of more realistic replicas for use in laboratory studies

Trout mortalities as a result of Streptococcus infection

Excessive mortalities were experienced in the bigger rainbow trout (Salmo gairdneri) at an efficiently managed trout farm. All tests for known toxins in the feed and water proved to be negative. A faecal Streptococcus which belongs to the Lancefield group D but which could not be identified as belonging to any of the recognized species within this group, was isolated from the spleens, livers and kidneys of affected fish. Pathogenicity studies with this organism proved it to be highly fatal to trout but not to Mozambique bream (Sarotherodon mossambicus), banded bream (Tilapia sparrmanii), carp (Cyprinus carpio) or largemouth bass (Micropterus salmoides). The isolation and biochemical characteristics of the organism are described. The symptoms, gross- and histopathology of this disease are described and discussed. The disease resembles a haemorrhagic septicaemia and appears to be associated with intensification and conditions of stress.This article has been scanned in colour with a HP Scanjet 5590; 300dpi. Adobe Acrobat XI Pro was used to OCR the text and also for the merging and conversion to the final presentation PDF-Format

Spin Structure of the Pion in a Light-Cone Representation

The spin structure of the pion is discussed by transforming the wave function for the pion in the naive quark model into a light-cone representation. It is shown that there are higher helicity ($\lambda_{1}+\lambda_{2}=\pm1$) states in the full light-cone wave function for the pion besides the ordinary helicity ($\lambda_{1}+\lambda_{2}=0$) component wave functions as a consequence from the Melosh rotation relating spin states in light-front dynamics and those in instant-form dynamics. Some low energy properties of the pion, such as the electromagnetic form factor, the charged mean square radius, and the weak decay constant, could be interrelated in this representation with reasonable parameters.Comment: 15 Latex pages, 2 figures upon reques

Spin observables in deuteron-proton radiative capture at intermediate energies

A radiative deuteron-proton capture experiment was carried out at KVI using polarized-deuteron beams at incident energies of 55, 66.5, and 90 MeV/nucleon. Vector and tensor-analyzing powers were obtained for a large angular range. The results are interpreted with the help of Faddeev calculations, which are based on modern two- and three-nucleon potentials. Our data are described well by the calculations, and disagree significantly with the observed tensor anomaly at RCNP.Comment: 10 pages, 4 figures, submitted to PL

On a Light Spinless Particle Coupled to Photons

A pseudoscalar or scalar particle $\phi$ that couples to two photons but not to leptons, quarks and nucleons would have effects in most of the experiments searching for axions, since these are based on the $a \gamma \gamma$ coupling. We examine the laboratory, astrophysical and cosmological constraints on $\phi$ and study whether it may constitute a substantial part of the dark matter. We also generalize the $\phi$ interactions to possess $SU(2) \times U(1)$ gauge invariance, and analyze the phenomenological implications.Comment: LaTex, 20p., 6 figures. Changes in sections 4, 5 and figure 2, our bounds are now more stringent. To be published in Physical Review

Untangling the complexities of processing and analysis for untargeted LC-MS data using open-source tools

Untargeted metabolomics is a powerful tool for measuring and understanding complex biological chemistries. However, employment, bioinformatics and downstream analysis of mass spectrometry (MS) data can be daunting for inexperienced users. Numerous open-source and free-to-use data processing and analysis tools exist for various untargeted MS approaches, including liquid chromatography (LC), but choosing the ‘correct’ pipeline isn’t straight-forward. This tutorial, in conjunction with a user-friendly online guide presents a workflow for connecting these tools to process, analyse and annotate various untargeted MS datasets. The workflow is intended to guide exploratory analysis in order to inform decision-making regarding costly and time-consuming downstream targeted MS approaches. We provide practical advice concerning experimental design, organisation of data and downstream analysis, and offer details on sharing and storing valuable MS data for posterity. The workflow is editable and modular, allowing flexibility for updated/changing methodologies and increased clarity and detail as user participation becomes more common. Hence, the authors welcome contributions and improvements to the workflow via the online repository. We believe that this workflow will streamline and condense complex mass-spectrometry approaches into easier, more manageable, analyses thereby generating opportunities for researchers previously discouraged by inaccessible and overly complicated software