104 research outputs found

    The role of the quantum dispersion in the Coulomb correction of Bose-Einstein correlations

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    The time dependent Schroedinger equation for two identical and charged pions is solved using wavepacket states. It is shown that the expected Coulomb distortion in the momentum correlation function is obliterated by the dispersion of the localized states, and therefore becomes unobservable.Comment: 10 pages, LaTeX, 2 figures, 0.2 Mb postscript, submitted to Phys. Lett.

    Comparison of stochastic optimization methods for receptor-ligand docking

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    Fluctuation analysis and accuracy of a large-scale in silico screen

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    Stochastic optimization methods for structure prediction of biomolecular nanoscale systems

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    Modelling diffusional transport in the interphase cell nucleus

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    In this paper a lattice model for diffusional transport of particles in the interphase cell nucleus is proposed. Dense networks of chromatin fibers are created by three different methods: randomly distributed, non-interconnected obstacles, a random walk chain model, and a self avoiding random walk chain model with persistence length. By comparing a discrete and a continuous version of the random walk chain model, we demonstrate that lattice discretization does not alter particle diffusion. The influence of the 3D geometry of the fiber network on the particle diffusion is investigated in detail, while varying occupation volume, chain length, persistence length and walker size. It is shown that adjacency of the monomers, the excluded volume effect incorporated in the self avoiding random walk model, and, to a lesser extent, the persistence length, affect particle diffusion. It is demonstrated how the introduction of the effective chain occupancy, which is a convolution of the geometric chain volume with the walker size, eliminates the conformational effects of the network on the diffusion, i.e., when plotting the diffusion coefficient as a function of the effective chain volume, the data fall onto a master curve.Comment: 9 pages, 8 figure
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