458 research outputs found

    Towards the re-verification of process tank calibrations

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    Re-verification is needed to ensure that the calibration (the relationship between measured level and measured volume) that is obtained during commissioning hasn’t changed over time. This can be achieved, in part, by metering in solution and correlating with marks identified a priori. Mark identification and correlation are discussed and possible error sources are outlined

    Use of Local Image Information in Depth Edge Classification by Humans and Neural Networks

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    Humans can use local cues to distinguish image edges caused by a depth change from other types of edges (Vilankar et al., 2014). But which local cues? Here we use the SYNS database (Adams et al., 2016) to automatically label edges in images of natural scenes as depth or non-depth. We use this ground truth to identify the cues used by human observers and convolutional neural networks (CNNs) for edge classification. Eight observers viewed square image patches, each centered on an image edge, ranging in width from 0.6 to 2.4 degrees (8 to 32 pixels). Human judgments (depth/non-depth) were compared to responses of a CNN trained on the same task. Human performance improved with patch size (65%-74% correct) but remained well below CNN accuracy (82-86% correct). Agreement between humans and the CNN was above chance but lower than human-human agreement. Decision Variable Correlation (Sebastian & Geisler, in press) was used to evaluate the relationships between depth responses and local edge cues. Humans seem to rely primarily on contrast cues, specifically luminance contrast and red-green contrast across the edge. The CNN also relies on luminance contrast, but unlike humans it seems to make use of mean luminance and red-green intensity as well. These local luminance and color features provide valid cues for depth edge discrimination in natural scenes

    Effects of antenatal betamethasone on preterm human and mouse ductus arteriosus: comparison with baboon data.

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    BackgroundAlthough studies involving preterm infants ≤34 weeks gestation report a decreased incidence of patent ductus arteriosus after antenatal betamethasone, studies involving younger gestation infants report conflicting results.MethodsWe used preterm baboons, mice, and humans (≤276/7 weeks gestation) to examine betamethasone's effects on ductus gene expression and constriction both in vitro and in vivo.ResultsIn mice, betamethasone increased the sensitivity of the premature ductus to the contractile effects of oxygen without altering the effects of other contractile or vasodilatory stimuli. Betamethasone's effects on oxygen sensitivity could be eliminated by inhibiting endogenous prostaglandin/nitric oxide signaling. In mice and baboons, betamethasone increased the expression of several developmentally regulated genes that mediate oxygen-induced constriction (K+ channels) and inhibit vasodilator signaling (phosphodiesterases). In human infants, betamethasone increased the rate of ductus constriction at all gestational ages. However, in infants born ≤256/7 weeks gestation, betamethasone's contractile effects were only apparent when prostaglandin signaling was inhibited, whereas at 26-27 weeks gestation, betamethasone's contractile effects were apparent even in the absence of prostaglandin inhibitors.ConclusionsWe speculate that betamethasone's contractile effects may be mediated through genes that are developmentally regulated. This could explain why betamethasone's effects vary according to the infant's developmental age at birth

    Distribution of Introns in Fungal Histone Genes

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    Saccharomycotina and Taphrinomycotina lack intron in their histone genes, except for an intron in one of histone H4 genes of Yarrowia lipolytica. On the other hand, Basidiomycota and Perizomycotina have introns in their histone genes. We compared the distributions of 81, 47, 79, and 98 introns in the fungal histone H2A, H2B, H3, and H4 genes, respectively. Based on the multiple alignments of the amino acid sequences of histones, we identified 19, 13, 31, and 22 intron insertion sites in the histone H2A, H2B, H3, and H4 genes, respectively. Surprisingly only one hot spot of introns in the histone H2A gene is shared between Basidiomycota and Perizomycotina, suggesting that most of introns of Basidiomycota and Perizomycotina were acquired independently. Our findings suggest that the common ancestor of Ascomycota and Basidiomycota maybe had a few introns in the histone genes. In the course of fungal evolution, Saccharomycotina and Taphrinomycotina lost the histone introns; Basidiomycota and Perizomycotina acquired other introns independently. In addition, most of the introns have sequence similarity among introns of phylogenetically close species, strongly suggesting that horizontal intron transfer events between phylogenetically distant species have not occurred recently in the fungal histone genes

    Value of flow cytometry for MRD-based relapse prediction in B-cell precursor ALL in a multicenter setting

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    PCR of TCR/Ig gene rearrangements is considered the method of choice for minimal residual disease (MRD) quantification in BCP-ALL, but flow cytometry analysis of leukemia-associated immunophenotypes (FCM-MRD) is faster and biologically more informative. FCM-MRD performed in 18 laboratories across seven countries was used for risk stratification of 1487 patients with BCP-ALL enrolled in the NOPHO ALL2008 protocol. When no informative FCM-marker was available, risk stratification was based on real-time quantitative PCR. An informative FCM-marker was found in 96.2% and only two patients (0.14%) had non-informative FCM and non-informative PCR-markers. The overall 5-year event-free survival was 86.1% with a cumulative incidence of relapse (CIR5y) of 9.5%. FCM-MRD levels on days 15 (HzR 4.0, p 10(-4) associated with a CIR5y = 22.1%. In conclusion, FCM-MRD performed in a multicenter setting is a clinically useful method for MRD-based treatment stratification in BCP-ALL.Peer reviewe
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