232 research outputs found
Tip-surface forces, amplitude, and energy dissipation in amplitude-modulation (tapping mode) force microscopy
Amplitude-modulation (tapping mode) atomic force microscopy is a technique for high resolution imaging of a wide variety of surfaces in air and liquid environments. Here by using the virial theorem and energy conservation principles we have derived analytical relationships between the oscillation amplitude, phase shift, and average tip-surface forces. We find that the average value of the interaction force and oscillation and the average power dissipated by the tip-surface interaction are the quantities that control the amplitude reduction. The agreement obtained between analytical and numerical results supports the analytical method.This work has been supported by the Dirección General de Investigación Científica y Técnica (PB98-0471) and the
European Union (BICEPS, BIO4-CT-2112). A. S. P. acknowledges financial support from the Comunidad Autónoma de Madrid.Peer reviewe
Implementation of on-site velocity boundary conditions for D3Q19 lattice Boltzmann
On-site boundary conditions are often desired for lattice Boltzmann
simulations of fluid flow in complex geometries such as porous media or
microfluidic devices. The possibility to specify the exact position of the
boundary, independent of other simulation parameters, simplifies the analysis
of the system. For practical applications it should allow to freely specify the
direction of the flux, and it should be straight forward to implement in three
dimensions. Furthermore, especially for parallelized solvers it is of great
advantage if the boundary condition can be applied locally, involving only
information available on the current lattice site. We meet this need by
describing in detail how to transfer the approach suggested by Zou and He to a
D3Q19 lattice. The boundary condition acts locally, is independent of the
details of the relaxation process during collision and contains no artificial
slip. In particular, the case of an on-site no-slip boundary condition is
naturally included. We test the boundary condition in several setups and
confirm that it is capable to accurately model the velocity field up to second
order and does not contain any numerical slip.Comment: 13 pages, 4 figures, revised versio
Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation.
Makorins are evolutionary conserved proteins that contain C3H-type zinc finger modules and a RING E3 ubiquitin ligase domain. In Drosophila, maternal Makorin 1 (Mkrn1) has been linked to embryonic patterning but the mechanism remained unsolved. Here, we show that Mkrn1 is essential for axis specification and pole plasm assembly by translational activation of oskar (osk). We demonstrate that Mkrn1 interacts with poly(A) binding protein (pAbp) and binds specifically to osk 3' UTR in a region adjacent to A-rich sequences. Using Drosophila S2R+ cultured cells we show that this binding site overlaps with a Bruno1 (Bru1) responsive element (BREs) that regulates osk translation. We observe increased association of the translational repressor Bru1 with osk mRNA upon depletion of Mkrn1, indicating that both proteins compete for osk binding. Consistently, reducing Bru1 dosage partially rescues viability and Osk protein level in ovaries from Mkrn1 females. We conclude that Mkrn1 controls embryonic patterning and germ cell formation by specifically activating osk translation, most likely by competing with Bru1 to bind to osk 3' UTR
Detection of a flow induced magnetic field eigenmode in the Riga dynamo facility
In an experiment at the Riga sodium dynamo facility, a slowly growing
magnetic field eigenmode has been detected over a period of about 15 seconds.
For a slightly decreased propeller rotation rate, additional measurements
showed a slow decay of this mode. The measured results correspond satisfactory
with numerical predictions for the growth rates and frequencies
Quantitative analysis of numerical estimates for the permeability of porous media from lattice-Boltzmann simulations
During the last decade, lattice-Boltzmann (LB) simulations have been improved
to become an efficient tool for determining the permeability of porous media
samples. However, well known improvements of the original algorithm are often
not implemented. These include for example multirelaxation time schemes or
improved boundary conditions, as well as different possibilities to impose a
pressure gradient. This paper shows that a significant difference of the
calculated permeabilities can be found unless one uses a carefully selected
setup. We present a detailed discussion of possible simulation setups and
quantitative studies of the influence of simulation parameters. We illustrate
our results by applying the algorithm to a Fontainebleau sandstone and by
comparing our benchmark studies to other numerical permeability measurements in
the literature.Comment: 14 pages, 11 figure
Genotyping and antibiotic resistance of thermophilic Campylobacter isolated from chicken and pig meat in Vietnam
Background Campylobacter species are recognized as the most common cause of
foodborne bacterial gastroenteritis in humans. In this study nine
Campylobacter strains isolated from chicken meat and pork in Hanoi, Vietnam,
were characterized using molecular methods and tested for antibiotic
resistance. Results The nine isolates (eight C. jejuni and one C. coli) were
identified by multiplex PCR, and tested for the presence or absence of 29 gene
loci associated with virulence, lipooligosaccharide (LOS) biosynthesis and
further functions. flaA typing, multilocus sequence typing and microarray
assay investigation showed a high degree of genetic diversity among these
isolates. In all isolates motility genes (flaA, flaB, flhA, fliM),
colonization associated genes (cadF, docB), toxin production genes (cdtA,
cdtB, secD, secF), and the LOS biosynthesis gene pglB were detected. Eight
gene loci (fliY, virB11, Cje1278, Cj1434c, Cj1138, Cj1438c, Cj1440c, Cj1136)
could not be detected by PCR. A differing presence of the gene loci ciaB (22.2
%), Cje1280 (77.8 %), docC (66.7 %), and cgtB (55.6 %) was found. iamA, cdtC,
and the type 6 secretion system were present in all C. jejuni isolates but not
in C. coli. flaA typing resulted in five different genotypes within C. jejuni,
MLST classified the isolates into seven sequence types (ST-5155, ST-6736,
ST-2837, ST-4395, ST-5799, ST-4099 and ST-860). The microarray assay analysis
showed a high genetic diversity within Vietnamese Campylobacter isolates which
resulted in eight different types for C. jejuni. Antibiotic susceptibility
profiles showed that all isolates were sensitive to gentamicin and most
isolates (88.8 %) were sensitive to chloramphenicol, erythromycin and
streptomycin. Resistance rates to nalidixic acid, tetracycline and
ciprofloxacin were 88.9, 77.8 and 66.7 %, respectively. Conclusions To the
best of our knowledge, this study is the first report that shows high genetic
diversity and remarkable antibiotic resistance of Campylobacter strains
isolated from meat in Vietnam which can be considered of high public health
significance. These preliminary data show that large scale screenings are
justified to assess the relevance of Campylobacter infections on human health
in Vietnam
Step-in dosing of bosutinib in pts with chronic phase chronic myeloid leukemia (CML) after second-generation tyrosine kinase inhibitor (TKI) therapy: results of the Bosutinib Dose Optimization (BODO) Study
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