1995 atmospheric trace molecule spectroscopy (ATMOS) linelist

The Atmospheric Trace Molecule Spectroscopy (ATMOS) experiment uses a Fourier-transform spectrometer on board the Space Shuttle to record infrared solar occultation spectra of the atmosphere at 0.01-cm^(-1) resolution. The current version of the molecular spectroscopic database used for the analysis of the data obtained during three Space Shuttle missions between 1992 and 1994 is described. It is an extension of the effort first described by Brown et al. [Appl. Opt. 26, 5154 (1987)] to maintain an up-to-date database for the ATMOS experiment. The three-part ATMOS compilation contains Line parameters of 49 molecular species between 0 and 10000 cm^(-1), The main list, with nearly 700,000 entries, is an updated version of the HITRAN 1992 database. The second compilation contains supplemental line parameters, and the third set consists of absorption cross sections to represent the unresolvable features of heavy molecules. The differences between the ATMOS database and other public compilations are discussed

Effectiveness of Chain Link Turtle Fence and Culverts in Reducing Turtle Mortality and Providing Connectivity along U.S. Hwy 83, Valentine National Wildlife Refuge, Nebraska, USA

We evaluated the effectiveness of existing turtle fences through collecting and analyzing turtle mortality data along U.S. Hwy 83, in and around Valentine National Wildlife Refuge, Nebraska, USA. We also investigated the level of connectivity for turtles provided through the culverts that were originally designed to pass water through a capture-mark-recapture experiment. While fenced valley sections had 33.1% fewer turtle observations than unfenced valley sections, the difference was not significant. However, we think that the effectiveness of the fence can be improved through fence repairs, other modifications of the fences, vegetation maintenance, and extending the length of the fences. Four of the five turtle species present in the study area used the culverts: common snapping turtle, painted turtle, Blanding’s turtle, and yellow mud turtle. However, we did not record ornate box turtle using the culverts. The culverts appear to have only provided marginal connectivity (7%) for the turtles that were interested in crossing the highway between 7 June and 30 September 2016. Assuming all turtles that passed the culverts in this period were originally marked, connectivity was still only 44%. We suggest implementing safe crossing opportunities (i.e. culverts or bridges) specifically designed for turtles, locating the culverts and bridges at intervals based on the home range size of the turtles, and maintaining the vegetation at the culverts and bridges so that they do not block turtle access to the crossings

Measurements of CH4, N2O, CO, H2O and O3 in the middle atmosphere by the ATMOS experiment on Spacelab 3

The volume mixing ratios of five minor gases (CH4, N2O, CO, H2O, and O3) were retrieved through the middle atmosphere from the analysis of 0.01/cm resolution infrared solar occultation spectra recorded near 28 N and 48 S latitudes with the ATMOS (Atmospheric Trace Molecule Spectroscopy) instrument, flown on board Spacelab 3. The results, which constitute the first simultaneous observations of continuous profiles through the middle atmosphere for these gases, are in general agreement with reported measurements from ground, balloon and satellite-based instruments for the same seasons. In detail, the vertical profiles of these gases show the effects of the upper and middle atmospheric transport patterns dominant during the season of these observations. The profiles inferred at different longitudes around 28 N suggest a near-uniform zonal distribution of these gases. Although based on fewer observations, the sunrise occultation measurements point to a larger variability in the vertical distribution of these gases at 48 S

A special irreducible matrix representation of the real Clifford algebra C(3,1)

4x4 Dirac (gamma) matrices (irreducible matrix representations of the Clifford algebras C(3,1), C(1,3), C(4,0)) are an essential part of many calculations in quantum physics. Although the final physical results do not depend on the applied representation of the Dirac matrices (e.g. due to the invariance of traces of products of Dirac matrices), the appropriate choice of the representation used may facilitate the analysis. The present paper introduces a particularly symmetric real representation of 4x4 Dirac matrices (Majorana representation) which may prove useful in the future. As a byproduct, a compact formula for (transformed) Pauli matrices is found. The consideration is based on the role played by isoclinic 2-planes in the geometry of the real Clifford algebra C(3,0) which provide an invariant geometric frame for it. It can be generalized to larger Clifford algebras.Comment: 23 pages LaTeX, to appear in the J. Math. Phys. (v2: appendix B on Pauli matrices and references are added, minor other changes

Impact of previous hepatitis B infection on the clinical outcomes from chronic hepatitis C? A population-level analysis

Chronic coinfection with hepatitis C virus (HCV) and hepatitis B virus (HBV) is associated with adverse liver outcomes. The clinical impact of previous HBV infection on liver disease in HCV infection is unknown. We aimed at determining any association of previous HBV infection with liver outcomes using antibodies to the hepatitis B core antigen (HBcAb) positivity as a marker of exposure. The Scottish Hepatitis C Clinical Database containing data for all patients attending HCV clinics in participating health boards was linked to the HBV diagnostic registry and mortality data from Information Services Division, Scotland. Survival analyses with competing risks were constructed for time from the first appointment to decompensated cirrhosis, hepatocellular carcinoma (HCC) and liver‐related mortality. Records of 8513 chronic HCV patients were included in the analyses (87 HBcAb positive and HBV surface antigen [HBsAg] positive, 1577 HBcAb positive and HBsAg negative, and 6849 HBcAb negative). Multivariate cause‐specific proportional hazards models showed previous HBV infection (HBcAb positive and HBsAg negative) significantly increased the risks of decompensated cirrhosis (hazard ratio [HR]: 1.29, 95% CI: 1.01‐1.65) and HCC (HR: 1.64, 95% CI: 1.09‐2.49), but not liver‐related death (HR: 1.02, 95% CI: 0.80‐1.30). This is the largest study to date showing an association between previous HBV infection and certain adverse liver outcomes in HCV infection. Our analyses add significantly to evidence which suggests that HBV infection adversely affects liver health despite apparent clearance. This has important implications for HBV vaccination policy and indications for prioritization of HCV therapy

Identification of volatiles generated by potato tubers (Solanum tuberosum CV : Maris Piper) infected by erwinia carotovora, bacillus polymyxa and arthrobacter sp

Bacteria were isolated from internal tissues of surface sterilized healthy tubers of Solanum tuberosum cv. Maris Piper (8 different isolates) and from tubers inoculated with Erwinia carotovora ssp. carotovora showing soft-rot symptoms (3 different isolates), and identified by fatty acid profiling. Bacillus polymyxa and an Arthrobacter sp. were isolated from both sources, E. carotovora only from the soft-rotted tubers. The volatile organic compounds (VOCs) generated by tubers inoculated with E. carotovora, B. polymyxa and the Arthrobacter sp. were identified. Inoculated tubers of cv. Maris Piper were incubated under controlled humidity (95% relative humidity) and temperature (10°C) to simulate typical storage conditions. B. polymyxa and Arthrobacter sp. did not cause symptoms, whilst E. carotovora caused limited soft-rot infections after 4 weeks at the low temperatures typically associated with potatoes in storage. The VOCs released to the headspace around these tubers were collected using an adsorbent system and analysed by Gas Chromatography-Mass Spectrometry (GC-MS). Twenty-two volatiles unique to E. carotovora infection of potato tubers were found,) including 10 alkanes, four alkenes, two aldehydes, one sulphide, one ketone, one alcohol, one aromatic, one acid and one heterocyclic compound. B. polymyxa generated three unique volatiles: N,N-dimethylformamide, 1-pentadecene and 1-hexadecane. Only one volatile, 2,3-dihydrofuran, was unique to the Arthrobacter infection. Production of volatile nitrogen species from E. carotovora-infected tubers increased with time, whereas none were detected in the headspace above uninfected tubers. Further analysis using a modified GC-MS method established that ammonia, trimethylamine and several volatile sulphides were evolved from tubers infected by E. carotovora. No specific volatile was useful as a marker associated with any of the three bacterial species but in the case of E. carotovora-infected potato tubers a significant increase in the volume of compounds evolved was clearly observed. The results are discussed in relation to the use of sensors to detect VOCs evolved from infected tubers in order to provide an early warning system for the control of soft rot in potato store

Gaussian Fluctuation in Random Matrices

Let $N(L)$ be the number of eigenvalues, in an interval of length $L$, of a matrix chosen at random from the Gaussian Orthogonal, Unitary or Symplectic ensembles of ${\cal N}$ by ${\cal N}$ matrices, in the limit ${\cal N}\rightarrow\infty$. We prove that $[N(L) - \langle N(L)\rangle]/\sqrt{\log L}$ has a Gaussian distribution when $L\rightarrow\infty$. This theorem, which requires control of all the higher moments of the distribution, elucidates numerical and exact results on chaotic quantum systems and on the statistics of zeros of the Riemann zeta function. \noindent PACS nos. 05.45.+b, 03.65.-wComment: 13 page

Heavy ozone enrichments from ATMOS infrared solar spectra

Vertical enrichment profiles of stratospheric ^(16)O^(16)O^(18)O and ^(16)O^(18)O^(16)O (hereafter referred to as ^(668)O_3 and ^(686)O_3 respectively) have been derived from space-based solar occultation spectra recorded at 0.01 cm^(−1) resolution by the ATMOS (Atmospheric Trace MOlecule Spectroscopy) Fourier-transform infrared (FTIR) spectrometer. The observations, made during the Spacelab 3 and ATLAS-1, -2, and -3 shuttle missions, cover polar, mid-latitude and tropical regions between 26 to 2.6 mb inclusive (≈ 25 to 41 km). Average enrichments, weighted by molecular ^(48)O_3 density, of (15±6)% were found for ^(668)O_3 and (10±7)% for ^(686)O_3. Defining the mixing ratio of ^(50)O_3 as the sum of those for ^(668)O_3 and ^(686)O_3, an enrichment of (13±5)% was found for ^(50)O_3 (1σ standard deviation). No latitudinal or vertical gradients were found outside this standard deviation. From a series of ground-based measurements by the ATMOS instrument at Table Mountain, California (34.4°N), an average total column ^(668)O_3 enrichment of (17±4)% (1σ standard deviation) was determined, with no significant seasonal variation discernable. Possible biases in the spectral intensities that affect the determination of absolute enrichments are discussed

Severe Unresolved Cholestasis Due to Unknown Etiology Leading to Early Allograft Failure Within the First 3 Months of Liver Transplantation

Background Causes of severe cholestasis after liver transplantation (LT) are multi-factorial. Although the etiology is predictable in some, others culminate in graft/patient loss without a definitive cause identified. Severe cholestasis is usually associated with overlapped histological findings of rejection and biliary features, and diagnostic interpretation may pose a challenge.Methods This is 10-year retrospective analysis of patients with unexplained severe cholestasis resulting in death/graft loss within 90 days of LT. Of 1 583 LT during the study period, 90-day graft failure occurred in 129 (8%) cases; a total of 45 (3%) patients had unresolving severe cholestasis (bilirubin, >100 mol/L; alkaline phosphatase, >400 UI/L after 15 days from LT), excluding those due to primary nonfunction/sepsis/vascular causes (n = 84). Demographics, allograft biopsies, radiological investigations, and clinical outcome were analyzed.Results All patients had persistent abnormal liver biochemistry. Doppler ultrasound scan was normal in all cases. Thirty-five (78%) recipients had at least 1 allograft biopsy (2 [1-9]). On the first biopsy, 22 (63%) patients had acute rejection, 4 (18%) early-chronic rejection, 12 (34%) antibody-mediated rejection. In subsequent biopsies chronic rejection was evident in 5 (14%) cases. Donor-specific antibodies were detected in all patients tested. Biliary anatomy was studied in detail in 9 (20%) patients, all presenting biliary strictures. The majority (n = 39; 87%) died within 32 (10-91) days, only survivors were from retransplantation (n = 3;6.5%) and biliary intervention (n = 3;6.5%).Conclusions Unresolving severe cholestasis after LT is a key parameter predicting patient/allograft outcome. Histologically, rejection seems to overlap with biliary strictures; hence, allograft biopsy with signs of rejection should not be a reason to overlook biliary problems, in particular when biliary features are present. Only extensive radiological investigation/intervention or retransplantation prevents patient/allograft loss