Brachypodium distachyon line Bd3-1 resistance is elicited by the barley stripe mosaic virus triple gene block 1 movement protein

Barley stripe mosaic virus North Dakota 18 (ND18), Beijing (BJ), Xinjiang (Xi), Type (TY) and CV21 strains are unable to infect the Brachypodium distachyon Bd3-1 inbred line, which harbours a resistance gene designated Bsr1, but the Norwich (NW) strain is virulent on Bd3-1. Analysis of ND18 and NW genomic RNA reassortants and RNA beta mutants demonstrates that two amino acids within the helicase motif of the triple gene block 1 (TGB1) movement protein have major effects on their Bd3-1 phenotypes. Resistance to ND18 correlates with an arginine residue at TGB1 position 390 (R-390) and a threonine at position 392 (T-392), whereas the virulent NW strain contains lysines (K) at both positions. ND18 TGB1 R390K ((ND)TGB1(R390K)) and (ND)TGB1(T392K) single substitutions, and an (ND)TGB1(R390K,T392K) double mutation resulted in systemic infections of Bd3-1. Reciprocal (ND)TGB1 substitutions into (NW)TGB1 ((NW)TGB1(K390R) and (NW)TGB1(K392T)) failed to affect virulence, implying that K-390 and K-392 compensate for each other. In contrast, an (NW)TGB1(K390R,K392T) double mutant exhibited limited vascular movement in Bd3-1, but developed prominent necrotic streaks that spread from secondary leaf veins. This phenotype, combined with the appearance of necrotic spots in certain ND18 mutants, and necrosis and rapid wilting of Bd3-1 plants after BJ strain ((BJ)TGB1(K390,T392)) inoculations, show that Bd3-1 Bsr1 resistance is elicited by the TGB1 protein and suggest that it involves a hypersensitive response

H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification

Gene silencing by chromatin compaction is integral to establishing and maintaining cell fates. Trimethylated histone 3 lysine 9 (H3K9me3)-marked heterochromatin is reduced in embryonic stem cells compared to differentiated cells. However, the establishment and dynamics of closed regions of chromatin at protein-coding genes, in embryologic development, remain elusive. We developed an antibody-independent method to isolate and map compacted heterochromatin from low-cell number samples. We discovered high levels of compacted heterochromatin, H3K9me3-decorated, at protein-coding genes in early, uncommitted cells at the germ-layer stage, undergoing profound rearrangements and reduction upon differentiation, concomitant with cell type-specific gene expression. Perturbation of the three H3K9me3-related methyltransferases revealed a pivotal role for H3K9me3 heterochromatin during lineage commitment at the onset of organogenesis and for lineage fidelity maintenance

Conformational analysis of 1,4-disilabutane and 1,5-disilapentane by combined application of gas-phase electron diffraction and ab initio calculations and the crystal structure of 1,5-disilapentane at low temperatures

Mitzel NW, Smart BA, Blake AJ, Robertson HE, Rankin DWH. Conformational analysis of 1,4-disilabutane and 1,5-disilapentane by combined application of gas-phase electron diffraction and ab initio calculations and the crystal structure of 1,5-disilapentane at low temperatures. JOURNAL OF PHYSICAL CHEMISTRY. 1996;100(22):9339-9347.The gas-phase structures of the conformers of 1,4-disilabutane and 1,5-disilapentane have been analyzed from electron-diffraction data augmented by flexible restraints derived from ab initio calculations. This allowed the simultaneous refinement of 22 and 29 parameters for 1,4-disilabutane and 1,5-disilapentane, respectively. 1,4-Disilabutane has been found to be present in the vapour predominantly in the anti (A) form (76(2)% from the experiment, 83% predicted by theory). Consistency in the geometries is found between theoretical predictions and experimental findings, except for the torsion angle angle(SiCCSi) of the gauche (G) conformer [exptl 78.5(21)degrees, theor 68.0 degrees]. The AA conformer of 1,5-disilapentane was always found to be the lowest energy structure, while some doubt still remains about the ordering of the AG and G(+)G(-) conformers. The AA conformer is found to be the sole form present in the crystal [C2/c, a = 15.585(8), b = 4.704(3), c = 9.895(6) Angstrom, beta = 95.77(4)degrees, Z = 4]. Good agreement is found for geometrical parameters determined experimentally in the gas phase and solid state and calculated by nb initio methods. The following values represent the most important distances (r(g)/Angstrom) and angles (angle(g)/deg) found for the gas phase and crystal structures. 1,4-Disilabutane GED (A/G, esd's correspond to 1 sigma): r(CSi) 1.882(1)/1.885(1), r(CC) 1.563(5)/1.563(5), r(SiH) both 1.499(3), angle(CCSi) 110.7(2)/114.4(5), angle(SiCCSi) 180.0/78.5(21). 1,5-Disilapentane GED [AA/G(+)G(-)]: r(CSi) 1.886(1)/1.888(1), r(CC) 1.537(2)/1.539(2), r(SiH) both 1.487(4), angle(CCC)114.8(7)/118.8(7), angle(CCSi)114.1(4)/116.8(7), angle(SiCCC) 180.0/60.9(10); X [%, AA/AG/G(+)G(-)] 28(4)/40(5)/26(6). 1,5-Disilapentane XRD: r(CSi) 1.868(2), r(CC) 1.527(2), angle(CCC) 113.8(2), angle(CCSi) 115.2(1), angle(siCCC) 180.0(1)