548 research outputs found
Hysteresis and the dynamic phase transition in thin ferromagnetic films
Hysteresis and the non-equilibrium dynamic phase transition in thin magnetic
films subject to an oscillatory external field have been studied by Monte Carlo
simulation. The model under investigation is a classical Heisenberg spin system
with a bilinear exchange anisotropy in a planar thin film geometry with
competing surface fields. The film exhibits a non-equilibrium phase transition
between dynamically ordered and dynamically disordered phases characterized by
a critical temperature Tcd, whose location of is determined by the amplitude H0
and frequency w of the applied oscillatory field. In the presence of competing
surface fields the critical temperature of the ferromagnetic-paramagnetic
transition for the film is suppressed from the bulk system value, Tc, to the
interface localization-delocalization temperature Tci. The simulations show
that in general Tcd < Tci for the model film. The profile of the time-dependent
layer magnetization across the film shows that the dynamically ordered and
dynamically disordered phases coexist within the film for T < Tcd. In the
presence of competing surface fields, the dynamically ordered phase is
localized at one surface of the film.Comment: PDF file, 21 pages including 8 figure pages; added references,typos
added; to be published in PR
Human piRNAs Are Under Selection in Africans and Repress Transposable Elements
Piwi-interacting RNAs (piRNAs) are a recently discovered class of 24- to 30-nt noncoding RNAs whose best-understood function is to repress transposable elements (TEs) in animal germ lines. In humans, TE-derived sequences comprise ∼45% of the genome and there are several active TE families, including LINE-1 and Alu elements, which are a significant source of de novo mutations and intrapopulation variability. In the “ping-pong model,” piRNAs are thought to alternatively cleave sense and antisense TE transcripts in a positive feedback loop. Because piRNAs are poorly conserved between closely related species, including human and chimpanzee, we took a population genomics approach to study piRNA function and evolution. We found strong statistical evidence that piRNA sequences are under selective constraint in African populations. We then mapped the piRNA sequences to human TE sequences and found strong correlations between the age of each LINE-1 and Alu subfamily and the number of piRNAs mapping to the subfamily. This result supports the idea that piRNAs function as repressors of TEs in humans. Finally, we observed a significant depletion of piRNA matches in the reverse transcriptase region of the consensus human LINE-1 element but not of the consensus mouse LINE-1 element. This result suggests that reverse transcriptase might have an endogenous role specific to humans. Overall, our results elucidate the function and evolution of piRNAs in humans and highlight the utility of population genomics analysis for studying this rapidly evolving genetic system
Effective Interactions and Volume Energies in Charge-Stabilized Colloidal Suspensions
Charge-stabilized colloidal suspensions can be conveniently described by
formally reducing the macroion-microion mixture to an equivalent one-component
system of pseudo-particles. Within this scheme, the utility of a linear
response approximation for deriving effective interparticle interactions has
been demonstrated [M. J. Grimson and M. Silbert, Mol. Phys. 74, 397 (1991)].
Here the response approach is extended to suspensions of finite-sized macroions
and used to derive explicit expressions for (1) an effective electrostatic pair
interaction between pseudo-macroions and (2) an associated volume energy that
contributes to the total free energy. The derivation recovers precisely the
form of the DLVO screened-Coulomb effective pair interaction for spherical
macroions and makes manifest the important influence of the volume energy on
thermodynamic properties of deionized suspensions. Excluded volume corrections
are implicitly incorporated through a natural modification of the inverse
screening length. By including nonlinear response of counterions to macroions,
the theory may be generalized to systematically investigate effective many-body
interactions.Comment: 13 pages (J. Phys.: Condensed Matter, in press
Sheep Updates 2005 - Part 2
This session covers seven papers from different authors: CONCURRENT SESSIONS - STRATEGIC MANAGEMENT 1.Finishing Pastoral Lambs, Peter Tozer, Patricia Harper, Janette Drew, Department of Agriculture Western Australia 2. Coating Improves Wool Quality under Mixed Farming Conditions, KE Kemper, ML Hebart, FD Brien, KS Grimson, DH Smith AMM Ramsay, South Australian Research and Development Institute 3. J. S. Richards, K.D. Atkins, T. Thompson, W. K. Murray, Australian Sheep Industry Co-operative Research Centre and NSW Department of Primary Industries, Orange Agricultural Institute, Forest Rd. Orange 4. Strategic Risk Management in the Sheep Industry, J.R.L. Hall, ICON Agriculture (JRL Hall & Co) 5. Joining Prime Lambs for the Northern End of the Market - a Systems Approach, Chris Carter, Peter Tozer, Department of Agriculture Western Australia 6. Lifetime Wool - Dry feed budgeting tool, Mike Hyder, department of Agriculture Western Australia, John Young, Farming Systems Analysis Service, Kojonup, Western Australia 7. Influence of ultrafine wool fibre curvature and blending with cashmere on attributes of knitwear, B. A. McGregor, Primary Industries Research Victoria, Department of Primary Industries, Victori
Exchange anisotropy and the dynamic phase transition in thin ferromagnetic Heisenberg films
Monte Carlo simulations have been performed to investigate the dependence of
the dynamic phase behavior on the bilinear exchange anisotropy of a classical
Heisenberg spin system. The system under consideration is a planar thin
ferromagnetic film with competing surface fields subject to a pulsed
oscillatory external field. The results show that the films exhibit a single
discontinuous dynamic phase transition (DPT) as a function of the anisotropy of
the bilinear exchange interaction in the Hamiltonian. Furthermore there is no
evidence of stochastic resonance (SR) associated with the DPT. These results
are in marked contrast to the continuous DPT observed in the same system as a
function of temperature and applied field strength for a fixed bilinear
exchange anisotropy.Comment: 11 pages including 3 figure pages; submitted to PR
MicroRNAs targeting oncogenes are down-regulated in pancreatic malignant transformation from benign tumors
BACKGROUND
MicroRNA (miRNA) expression profiles have been described in pancreatic ductal adenocarcinoma (PDAC), but these have not been compared with pre-malignant pancreatic tumors. We wished to compare the miRNA expression signatures in pancreatic benign cystic tumors (BCT) of low and high malignant potential with PDAC, in order to identify miRNAs deregulated during PDAC development. The mechanistic consequences of miRNA dysregulation were further evaluated.
METHODS
Tissue samples were obtained at a tertiary pancreatic unit from individuals with BCT and PDAC. MiRNA profiling was performed using a custom microarray and results were validated using RT-qPCR prior to evaluation of miRNA targets.
RESULTS
Widespread miRNA down-regulation was observed in PDAC compared to low malignant potential BCT. We show that amongst those miRNAs down-regulated, miR-16, miR-126 and let-7d regulate known PDAC oncogenes (targeting BCL2, CRK and KRAS respectively). Notably, miR-126 also directly targets the KRAS transcript at a "seedless" binding site within its 3'UTR. In clinical specimens, miR-126 was strongly down-regulated in PDAC tissues, with an associated elevation in KRAS and CRK proteins. Furthermore, miR-21, a known oncogenic miRNA in pancreatic and other cancers, was not elevated in PDAC compared to serous microcystic adenoma (SMCA), but in both groups it was up-regulated compared to normal pancreas, implicating early up-regulation during malignant change.
CONCLUSIONS
Expression profiling revealed 21 miRNAs down-regulated in PDAC compared to SMCA, the most benign lesion that rarely progresses to invasive carcinoma. It appears that miR-21 up-regulation is an early event in the transformation from normal pancreatic tissue. MiRNA expression has the potential to distinguish PDAC from normal pancreas and BCT. Mechanistically the down-regulation of miR-16, miR-126 and let-7d promotes PDAC transformation by post-transcriptional up-regulation of crucial PDAC oncogenes. We show that miR-126 is able to directly target KRAS; re-expression has the potential as a therapeutic strategy against PDAC and other KRAS-driven cancers
Dynamic phase transitions in thin ferromagnetic films
Monte Carlo simulations have been used to investigate the dynamic phase
behavior of a classical Heisenberg spin system with a bilinear exchange
anisotropy in a planar thin film geometry. Studies of the field amplitude,
frequency and temperature dependence show dynamic phase transitions in films
subject to a pulsed oscillatory external field. Thin films with competing
surface fields show separate and distinct dynamic phase transitions for the
bulk and surface layers of the film. Between the two transitions, a mixed state
with coexisting dynamically ordered and dynamically disordered phases is
observed in the film. In contrast, the free film with no surface fields shows a
single dynamic phase transition as in a bulk system.Comment: 25 pages including figures in pdf format, to be published in PR
Effective Interactions and Volume Energies in Charged Colloids: Linear Response Theory
Interparticle interactions in charge-stabilized colloidal suspensions, of
arbitrary salt concentration, are described at the level of effective
interactions in an equivalent one-component system. Integrating out from the
partition function the degrees of freedom of all microions, and assuming linear
response to the macroion charges, general expressions are obtained for both an
effective electrostatic pair interaction and an associated microion volume
energy. For macroions with hard-sphere cores, the effective interaction is of
the DLVO screened-Coulomb form, but with a modified screening constant that
incorporates excluded volume effects. The volume energy -- a natural
consequence of the one-component reduction -- contributes to the total free
energy and can significantly influence thermodynamic properties in the limit of
low-salt concentration. As illustrations, the osmotic pressure and bulk modulus
are computed and compared with recent experimental measurements for deionized
suspensions. For macroions of sufficient charge and concentration, it is shown
that the counterions can act to soften or destabilize colloidal crystals.Comment: 14 pages, including 3 figure
Structure and thermodynamics of multi-component/multi-Yukawa mixtures
New small angle scattering experiments reveal new peaks in colloidal systems
(S.H. Chen et al) in the structure function S(k), in a region that was
inaccessible with older instruments. We propose here general closure of the
Ornstein Zernike equation, that is the sum of an arbitrary number of yukawas,
and that that will go well beyond the MSA . For this closure we get for the
Laplace transform of the pair correlation function . This function is easily
transformed into S(k) by replacing the Laplace variable by the Fourier
wariable. Although the method is general and valid for polydisperse systems, an
explicit continued fraction solution is found for the monodisperse case.Comment: 16 page
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