Coupled Hartree-Fock-Bogoliubov kinetic equations for a trapped Bose gas

Using the Kadanoff-Baym non-equilibrium Green's function formalism, we derive the self-consistent Hartree-Fock-Bogoliubov (HFB) collisionless kinetic equations and the associated equation of motion for the condensate wavefunction for a trapped Bose-condensed gas. Our work generalizes earlier work by Kane and Kadanoff (KK) for a uniform Bose gas. We include the off-diagonal (anomalous) pair correlations, and thus we have to introduce an off-diagonal distribution function in addition to the normal (diagonal) distribution function. This results in two coupled kinetic equations. If the off-diagonal distribution function can be neglected as a higher-order contribution, we obtain the semi-classical kinetic equation recently used by Zaremba, Griffin and Nikuni (based on the simpler Popov approximation). We discuss the static local equilibrium solution of our coupled HFB kinetic equations within the semi-classical approximation. We also verify that a solution is the rigid in-phase oscillation of the equilibrium condensate and non-condensate density profiles, oscillating with the trap frequency.Comment: 25 page

Conserving and Gapless Approximations for an Inhomogeneous Bose Gas at Finite Temperatures

We derive and discuss the equations of motion for the condensate and its fluctuations for a dilute, weakly interacting Bose gas in an external potential within the self--consistent Hartree--Fock--Bogoliubov (HFB) approximation. Account is taken of the depletion of the condensate and the anomalous Bose correlations, which are important at finite temperatures. We give a critical analysis of the self-consistent HFB approximation in terms of the Hohenberg--Martin classification of approximations (conserving vs gapless) and point out that the Popov approximation to the full HFB gives a gapless single-particle spectrum at all temperatures. The Beliaev second-order approximation is discussed as the spectrum generated by functional differentiation of the HFB single--particle Green's function. We emphasize that the problem of determining the excitation spectrum of a Bose-condensed gas (homogeneous or inhomogeneous) is difficult because of the need to satisfy several different constraints.Comment: plain tex, 19 page

Landau-Khalatnikov two-fluid hydrodynamics of a trapped Bose gas

Starting from the quantum kinetic equation for the non-condensate atoms and the generalized Gross-Pitaevskii equation for the condensate, we derive the two-fluid hydrodynamic equations of a trapped Bose gas at finite temperatures. We follow the standard Chapman-Enskog procedure, starting from a solution of the kinetic equation corresponding to the complete local equilibrium between the condensate and the non-condensate components. Our hydrodynamic equations are shown to reduce to a form identical to the well-known Landau-Khalatnikov two-fluid equations, with hydrodynamic damping due to the deviation from local equilibrium. The deviation from local equilibrium within the thermal cloud gives rise to dissipation associated with shear viscosity and thermal conduction. In addition, we show that effects due to the deviation from the diffusive local equilibrium between the condensate and the non-condensate (recently considered by Zaremba, Nikuni and Griffin) can be described by four frequency-dependent second viscosity transport coefficients. We also derive explicit formulas for all the transport coefficients. These results are used to introduce two new characteristic relaxation times associated with hydrodynamic damping. These relaxation times give the rate at which local equilibrium is reached and hence determine whether one is in the two-fluid hydrodynamic region.Comment: 26 pages, 3 postscript figures, submitted to PR

Finite temperature theory of the trapped two dimensional Bose gas

We present a Hartree-Fock-Bogoliubov (HFB) theoretical treatment of the two-dimensional trapped Bose gas and indicate how semiclassical approximations to this and other formalisms have lead to confusion. We numerically obtain results for the fully quantum mechanical HFB theory within the Popov approximation and show that the presence of the trap stabilizes the condensate against long wavelength fluctuations. These results are used to show where phase fluctuations lead to the formation of a quasicondensate.Comment: 4 pages, 3 figure

A particle-number-conserving Bogoliubov method which demonstrates the validity of the time-dependent Gross-Pitaevskii equation for a highly condensed Bose gas

The Bogoliubov method for the excitation spectrum of a Bose-condensed gas is generalized to apply to a gas with an exact large number $N$ of particles. This generalization yields a description of the Schr\"odinger picture field operators as the product of an annihilation operator $A$ for the total number of particles and the sum of a ``condensate wavefunction'' $\xi(x)$ and a phonon field operator $\chi(x)$ in the form $\psi(x) \approx A\{\xi(x) + \chi(x)/\sqrt{N}\}$ when the field operator acts on the N particle subspace. It is then possible to expand the Hamiltonian in decreasing powers of $\sqrt{N}$, an thus obtain solutions for eigenvalues and eigenstates as an asymptotic expansion of the same kind. It is also possible to compute all matrix elements of field operators between states of different N.Comment: RevTeX, 11 page

On the Origin of the Outgoing Black Hole Modes

The question of how to account for the outgoing black hole modes without drawing upon a transplanckian reservoir at the horizon is addressed. It is argued that the outgoing modes must arise via conversion from ingoing modes. It is further argued that the back-reaction must be included to avoid the conclusion that particle creation cannot occur in a strictly stationary background. The process of ``mode conversion" is known in plasma physics by this name and in condensed matter physics as ``Andreev reflection" or ``branch conversion". It is illustrated here in a linear Lorentz non-invariant model introduced by Unruh. The role of interactions and a physical short distance cutoff is then examined in the sonic black hole formed with Helium-II.Comment: 12 pages, plain latex, 2 figures included using psfig; Analogy to ``Andreev reflection" in superfluid systems noted, references and acknowledgment added, format changed to shorten tex

Generalized coherent state representation of Bose-Einstein condensates

We show that the quantum many-body state of Bose-Einstein condensates (BEC) consistent with the time-dependent Hartree-Fock-Bogoliubov (TDHFB) equations is a generalized coherent state (GCS). At zero temerature, the non-condensate density and the anomalous non-condensate correlation are not independent, allowing us to elimiate one of the three variables in the TDHFB.Comment: Submitted to Phys. Rev. A. No figures. Revised version fixes several minor typos, and adds to some discussions; no change to the conclusio

Mechanical response functions of finite temperature Bose-Einstein Condensates

Using the Liouville space framework developed in nonlinear optics we calculate the linear response functions and susceptibilities of Bose-Einstein condensates (BEC) subject to an arbitrary mechanical force. Distinct signatures of the dynamics of finite temperature BEC are obtained by solving the Hartree-Fock-Bogoliubov theory. Numerical simulations of the position dependent linear response functions of one dimensional trapped BEC in the time and the frequency domains are presented.Comment: 9 figures. Submitted to Phys. Rev.

Expression analysis of the TAB2 protein in adult mouse tissues

Background: The Interleukin-1 (IL-1) signaling component TAK1 binding protein 2 (TAB2) plays a role in activating the NFκB and JNK signaling pathways. Additionally, TAB2 functions in the nucleus as a repressor of NFκB-mediated gene regulation. Objective: To obtain insight into the function of TAB2 in the adult mouse, we analyzed the in vivo TAB2 expression pattern. Materials and methods: Cell lines and adult mouse tissues were analyzed for TAB2 protein expression and localization. Results: Immunohistochemical staining for TAB2 protein revealed expression in the vascular endothelium of most tissues, hematopoietic cells and brain cells. While TAB2 is localized in both the nucleus and the cytoplasm in cell lines, cytoplasmic localization predominates in hematopoietic tissues in vivo. Conclusions: The TAB2 expression pattern shows striking similarities with previously reported IL-1 receptor expression and NFκB activation patterns, suggesting that TAB2 in vivo is playing a role in these signaling pathways

Four simple recommendations to encourage best practices in research software [version 1; referees: awaiting peer review]

Scientific research relies on computer software, yet software is not always developed following practices that ensure its quality and sustainability. This manuscript does not aim to propose new software development best practices, but rather to provide simple recommendations that encourage the adoption of existing best practices. Software development best practices promote better quality software, and better quality software improves the reproducibility and reusability of research. These recommendations are designed around Open Source values, and provide practical suggestions that contribute to making research software and its source code more discoverable, reusable and transparent. This manuscript is aimed at developers, but also at organisations, projects, journals and funders that can increase the quality and sustainability of research software by encouraging the adoption of these recommendations. Keyword