Modern approaches to understanding stress and disease susceptibility: A review with special emphasis on respiratory disease

Studies in animals and humans link both physical and psychological stress with an increased incidence and severity of respiratory infections. For this manuscript we define stress as the physiological responses an individual undergoes while adjusting to a continually changing environment. It is known that stressors of various types (psychological/physical) can alter the physiological levels of certain hormones, chemokines and cytokines. These alterations send information to the central nervous system to take necessary action which then sends messages to appropriate organs/tissues/cells to respond. These messages can either activate or suppress the immune system as needed and failure to compensate for this by the body can lead to serious health-related problems. Little is known how stress affects disease susceptibility, yet understanding this mechanism is important for developing effective treatments, and for improving health and food quality. The current review focuses on (a) the effects of psychological stressors in humans and animals, (b) various methodologies employed to understand stress responses and their outcomes, and (c) the current status of the attempts to correlate stress and disease with respiratory disease as model system. The methodologies included in this review span traditional epidemiological, behavioral and immunological studies to current high throughput genomic, proteomic, metabolomic/metabonomic approaches. With the advent of various newer omics and bioinformatics methodologies we postulate that it will become feasible to understand the mechanisms through which stress can influence disease onset. Although the literature in this area is limited because of the infancy of this research area, the objective of this review is to illustrate the power of new approaches to address complex biological questions. These new approaches will also aid in our understanding how these processes are related to the dynamics and kinetics of changes in expression of multiple genes at various levels

Smolyak's algorithm: A powerful black box for the acceleration of scientific computations

We provide a general discussion of Smolyak's algorithm for the acceleration of scientific computations. The algorithm first appeared in Smolyak's work on multidimensional integration and interpolation. Since then, it has been generalized in multiple directions and has been associated with the keywords: sparse grids, hyperbolic cross approximation, combination technique, and multilevel methods. Variants of Smolyak's algorithm have been employed in the computation of high-dimensional integrals in finance, chemistry, and physics, in the numerical solution of partial and stochastic differential equations, and in uncertainty quantification. Motivated by this broad and ever-increasing range of applications, we describe a general framework that summarizes fundamental results and assumptions in a concise application-independent manner

Reactivation of temperature-sensitive and non-temperature-sensitive infectious bovine rhinotracheitis vaccine virus with dexamethasone

Latent infections by a temperature-sensitive (ts) infectious bovine rhinotracheitis virus vaccine was produced as frequently as by non-ts vaccine virus. Thus, virus could be reactivated in seven of eight ts vaccinates and six of eight non-ts vaccinates after dexamethasone treatment. Virus excretion could be detectable for 1 to 8 days at a level of 2 X 106 to 3 X 108 plaque-forming units per ml of nasal secretions. The reactivated virus was shown to be the same as the original virus used for vaccination by its inability to grow at the restrictive temperature (39°C) as well as by its restriction endonuclease cleavage pattern

Non-invasive methods of identifying and tracking wild squid

The ability to identify individual free-living animals in the field is an important method for studying their behavior. Apart from invasive external or internal tags, which may cause injury or abnormal behavior, most cephalopods cannot be tagged, as their skin is too soft and delicate for tag retention. Additionally, cephalopods remove many types of tags. However, body markings have been successfully used as a non invasive method to identify individuals of many different species of animals, including whale sharks, grey whales, seals, and zebras. We developed methods to sex and individually identify Caribbean reef squid, Sepiotheuthis sepioidea. Males showed distinct bright dots on their fins on a Basic Brown background and have a light line at the fin edge while the females had a gradual transition from Brown to Pale towards the edge of their fins without showing distinct fin-dots or lines. In the field we used four characters to distinguish individual S. sepioidea from each other – sex, relative size to each other, scars, and patterns of light-colored dots on their mantles and fins. These dot patterns are individually unique and constant in location through time. Observations in the field were backed up by an image database using illustrations and photography

On the analogy between streamlined magnetic and solid obstacles

Analogies are elaborated in the qualitative description of two systems: the magnetohydrodynamic (MHD) flow moving through a region where an external local magnetic field (magnetic obstacle) is applied, and the ordinary hydrodynamic flow around a solid obstacle. The former problem is of interest both practically and theoretically, and the latter one is a classical problem being well understood in ordinary hydrodynamics. The first analogy is the formation in the MHD flow of an impenetrable region -- core of the magnetic obstacle -- as the interaction parameter $N$, i.e. strength of the applied magnetic field, increases significantly. The core of the magnetic obstacle is streamlined both by the upstream flow and by the induced cross stream electric currents, like a foreign insulated insertion placed inside the ordinary hydrodynamic flow. In the core, closed streamlines of the mass flow resemble contour lines of electric potential, while closed streamlines of the electric current resemble contour lines of pressure. The second analogy is the breaking away of attached vortices from the recirculation pattern produced by the magnetic obstacle when the Reynolds number $Re$, i.e. velocity of the upstream flow, is larger than a critical value. This breaking away of vortices from the magnetic obstacle is similar to that occurring past a real solid obstacle. Depending on the inlet and/or initial conditions, the observed vortex shedding can be either symmetric or asymmetric.Comment: minor changes, accepted for PoF, 26 pages, 7 figure

Non-invasive methods of identifying and tracking wild squid

The ability to identify individual free-living animals in the field is an important method for studying their behavior. Apart from invasive external or internal tags, which may cause injury or abnormal behavior, most cephalopods cannot be tagged, as their skin is too soft and delicate for tag retention. Additionally, cephalopods remove many types of tags. However, body markings have been successfully used as a non invasive method to identify individuals of many different species of animals, including whale sharks, grey whales, seals, and zebras. We developed methods to sex and individually identify Caribbean reef squid, Sepiotheuthis sepioidea. Males showed distinct bright dots on their fins on a Basic Brown background and have a light line at the fin edge while the females had a gradual transition from Brown to Pale towards the edge of their fins without showing distinct fin-dots or lines. In the field we used four characters to distinguish individual S. sepioidea from each other – sex, relative size to each other, scars, and patterns of light-colored dots on their mantles and fins. These dot patterns are individually unique and constant in location through time. Observations in the field were backed up by an image database using illustrations and photography

Core of the Magnetic Obstacle

Rich recirculation patterns have been recently discovered in the electrically conducting flow subject to a local external magnetic termed "the magnetic obstacle" [Phys. Rev. Lett. 98 (2007), 144504]. This paper continues the study of magnetic obstacles and sheds new light on the core of the magnetic obstacle that develops between magnetic poles when the intensity of the external field is very large. A series of both 3D and 2D numerical simulations have been carried out, through which it is shown that the core of the magnetic obstacle is streamlined both by the upstream flow and by the induced cross stream electric currents, like a foreign insulated insertion placed inside the ordinary hydrodynamic flow. The closed streamlines of the mass flow resemble contour lines of electric potential, while closed streamlines of the electric current resemble contour lines of pressure. New recirculation patterns not reported before are found in the series of 2D simulations. These are composed of many (even number) vortices aligned along the spanwise line crossing the magnetic gap. The intensities of these vortices are shown to vanish toward to the center of the magnetic gap, confirming the general conclusion of 3D simulations that the core of the magnetic obstacle is frozen. The implications of these findings for the case of turbulent flow are discussed briefly.Comment: 14 pages, 9 figures, submitted to Journal of Turbulenc

Direct and Inverse Results on Bounded Domains for Meshless Methods via Localized Bases on Manifolds

This article develops direct and inverse estimates for certain finite dimensional spaces arising in kernel approximation. Both the direct and inverse estimates are based on approximation spaces spanned by local Lagrange functions which are spatially highly localized. The construction of such functions is computationally efficient and generalizes the construction given by the authors for restricted surface splines on $\mathbb{R}^d$. The kernels for which the theory applies includes the Sobolev-Mat\'ern kernels for closed, compact, connected, $C^\infty$ Riemannian manifolds.Comment: 29 pages. To appear in Festschrift for the 80th Birthday of Ian Sloa

Upside-down fluxes Down Under: CO2 net sink in winter and net source in summer in a temperate evergreen broadleaf forest

Predicting the seasonal dynamics of ecosystem carbon fluxes is challenging in broadleaved evergreen forests because of their moderate climates and subtle changes in canopy phenology. We assessed the climatic and biotic drivers of the seasonality of net ecosystem–atmosphere CO2 exchange (NEE) of a eucalyptus-dominated forest near Sydney, Australia, using the eddy covariance method. The climate is characterised by a mean annual precipitation of 800mm and a mean annual temperature of 18°C, hot summers and mild winters, with highly variable precipitation. In the 4-year study, the ecosystem was a sink each year (−225gCm−2yr−1 on average, with a standard deviation of 108gCm−2yr−1); inter-annual variations were not related to meteorological conditions. Daily net C uptake was always detected during the cooler, drier winter months (June through August), while net C loss occurred during the warmer, wetter summer months (December through February). Gross primary productivity (GPP) seasonality was low, despite longer days with higher light intensity in summer, because vapour pressure deficit (D) and air temperature (Ta) restricted surface conductance during summer while winter temperatures were still high enough to support photosynthesis. Maximum GPP during ideal environmental conditions was significantly correlated with remotely sensed enhanced vegetation index (EVI; r2 = 0.46) and with canopy leaf area index (LAI; r2= 0.29), which increased rapidly after mid-summer rainfall events. Ecosystem respiration (ER) was highest during summer in wet soils and lowest during winter months. ER had larger seasonal amplitude compared to GPP, and therefore drove the seasonal variation of NEE. Because summer carbon uptake may become increasingly limited by atmospheric demand and high temperature, and because ecosystem respiration could be enhanced by rising temperatures, our results suggest the potential for large-scale seasonal shifts in NEE in sclerophyll vegetation under climate change.The Australian Education Investment Fund, Australian Terrestrial Ecosystem Research Network, Australian Research Council and Hawkesbury Institute for the Environment at Western Sydney University supported this work. We thank Jason Beringer, Helen Cleugh, Ray Leuning and Eva van Gorsel for advice and support. Senani Karunaratne provided soil classification details

Jump at the onset of saltation

We reveal a discontinuous transition in the saturated flux for aeolian saltation by simulating explicitly particle motion in turbulent flow. The discontinuity is followed by a coexistence interval with two metastable solutions. The modification of the wind profile due to momentum exchange exhibits a second maximum at high shear strength. The saturated flux depends on the strength of the wind as $q_s=q_0+A(u_*-u_t)(u_*^2+u_t^2)$