DNA target sequence and FNR-dependent gene expression.

FNR proteins are global transcription regulators that respond to fluctuations in environmental oxygen. They recognise a DNA target consisting of an inverted repeat, TTGATN(1)N(2)N(3)N(4)ATCAA (where N(1-4) represents a non-conserved tetrad, NCT). Analysis of 68 known and predicted FNR sites from the Escherichia coli K12 genome revealed a bias toward A or T at positions N(2) and N(3) of the NCT. The effect of the NCT sequence on FNR-dependent transcription in vivo was assessed using a series of class II and class I model promoters with different NCT sequences. Changing the NCT sequence did not affect basal activity but altered anaerobic induction by as much as an order of magnitude. Thus, the NCT sequence is a fundamental component in setting the dynamic range of the FNR switch

Enhancing the Laser Scanning Confocal Microscopic Visualization of Lucifer Yellow Filled Cells in Whole-Mounted Tissue

The laser scanning confocal microscope (LSCM) is an extremely useful tool that allows fluorescently labelled cells to be visualized in whole-mount preparations. This is particularly advantageous, for example, in studying the dendritic trees of neurons with respect to their environment. One of the most popular, and easiest, ways to visualize a cell is to inject it intracellularly with the fluorophore Lucifer Yellow (LY). However, the argon gas lasers of most LSCM\u27s are not well matched to the excitation spectrum of aqueous LY. When this largely inappropriate excitation is combined with standard filters, designed for fluorescein fluorescence rather than Lucifer Yellow, the resulting image is poor. We report that clearing LY-injected neurons in methyl salicylate and mounting them in Entellan, a non-aqueous medium of high refractive index, enhances their visualization on a Bio-Rad LSCM with standard fluorescein (FITC) filters to an unexpected degree. This technique also leads to a substantial reduction in photobleaching

Reef shark science - key questions and future directions

The occurrence of sharks on coral reefs has been well documented for decades, especially since the advent of SCUBA diving. Despite this, it is only within the last decade that substantial research effort has been directed at these species. Research effort has increased in conjunction with the realization that reef shark populations have experienced significant declines throughout their distribution. However, trends in declines have been coupled with reports of high abundance in some areas providing confusion about what healthy reef shark populations should look like. Given that coral reefs are among the most biologically diverse and productive habitats, but also are one of the most threatened by climate change due to the effects of rising temperature and declining pH, there is a need to understand reef sharks to better predict consequences for their populations. Studies of reef sharks also have the potential to provide insights into the functioning of their populations and ecosystems more broadly because of the spatially constrained nature of their distributions, and high water visibility in most locations. These aspects make studying reef shark populations integral to understanding coral reef ecosystem dynamics and resilience to pressures. This paper synthesizes a number of key questions about coral reef sharks based on our experience researching this group of species over the past decade. Key research gaps and critical questions include aspects of life history, population dynamics, ecology, behavior, physiology, energetics, and more. This synthesis also considers the methods used to date, and what new and emerging techniques may be available to improve our understanding of reef shark populations. The synthesis will highlight how even basic questions relating to reef shark population sizes, how large they should be, and what impacts do they have on reef ecosystems, remain either unanswered or highly controversial

Vasorelaxing effects and inhibition of nitric oxide in macrophages by new iron-containing carbon monoxide-releasing molecules (CO-RMs)

Carbon monoxide-releasing molecules (CO-RMs) are a class of organometallo carbonyl complexes capable of delivering controlled quantities of CO gas to cells and tissues thus exerting a broad spectrum of pharmacological effects. Here we report on the chemical synthesis, CO releasing properties, cytotoxicity profile and pharmacological activities of four novel structurally related iron-allyl carbonyls. The major difference among the new CO-RMs tested was that three compounds (CORM-307, CORM-308 and CORM-314) were soluble in dimethylsulfoxide (DMSO), whereas a fourth one (CORM-319) was rendered water-soluble by reacting the iron-carbonyl with hydrogen tetrafluoroborate. We found that despite the fact all compounds liberated CO, CO-RMs soluble in DMSO caused a more pronounced toxic effect both in vascular and inflammatory cells as well as in isolated vessels. More specifically, iron carbonyls

CCD-based observations of PG 0856+121 and a theoretical analysis of its oscillation modes

BVRI CCD-based and near-IR (J) imaging, together with unfiltered photometry of the hot subdwarf B star PG 0856+121 are reported. Two close, faint, red, point-like sources are resolved. They account for the previously reported IR excess observed in this hot subdwarf. In addition, the new unfiltered differential photometry of PG 0856+121 confirms its previously reported pulsational nature. A comparison with the oscillation modes of stellar models suggests the possible presence of g modes.Comment: Accepted for publication in A&A. Seven pages, four figures include

Variational water-wave model with accurate dispersion and vertical vorticity

A new water-wave model has been derived which is based on variational techniques and combines a depth-averaged vertical (component of) vorticity with depth-dependent potential flow. The model facilitates the further restriction of the vertical profile of the velocity potential to n-th order polynomials or a finite-element profile with a small number of elements (say), leading to a framework for efficient modeling of the interaction of steepening and breaking waves near the shore with a large-scale horizontal flow. The equations are derived from a constrained variational formulation which leads to conservation laws for energy, mass, momentum and vertical vorticity. It is shown that the potential-flow water-wave equations and the shallow-water equations are recovered in the relevant limits. Approximate shock relations are provided, which can be used in numerical schemes to model breaking waves

The magnitude of educational disadvantage amongst indigenous minority groups in Australia.

Indigenous groups are amongst the most disadvantaged minority groups in the developed world. This paper examines the educational disadvantage of indigenous Australians by assessing academic performance at a relatively early age. We find that, by the age of 10, indigenous Australians are substantially behind non-indigenous Australians in academic achievement. Their relative performance deteriorates further over the next 2 years. School and locality do not appear to be important determinants of the indigenous to non-indigenous achievement gap. However, geographic remoteness, indigenous ethnicity and language use at home have a marked influence on educational achievement. A current focus of Australian indigenous policy is to increase school resources. Our results suggest that this will not eliminate indigenous educational disadvantage on its own